Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0230 ATGGGGACTCCAGTGAATATTATTGTGGGTTCTCATGTCTGGGTTGAAGATCCAGAAGTATCCTGGATTGATGGACAGGTATCAAAAATCAATGGAGAAGATGCTGAAATTGAAGCAACCAATGGGAACAAGGTTGTCGCAGAGTTATCAAAAATATATCCCAAAGATACCGAAGCTCCTGCGAATGGAGTGGATGATATGACTAAGCTTTCCTATTTGCACGAGCCTGGAGTCCTTCAGAACTTAAAAACTAGATATGAAttgaatgaaatatatTTGCACATGATGCAACAATGCAAGGGAGCACCATTTGAAGAGTTAAGCCCTCATGTATTTGCAGTTGCTGACGTTGCATATAGGGCAATgattaaagaaggaaaaaacaattcaattctGGTCAGTGGGGAAAGTGGAGCTGGTAAAACTGAAACTACAAAAATGCTTATGCAATACCTTGCCTTCTTAGGTGGTAGGGCTGCCACTGAAGGACGAACAGTTGAACAACAAGTTCTTGAATCAAATCCAGTTCTGGAAGCATTTGGCAATGCTAAAACTGTCAGGAATAACAATTCCAGTCGttttggtaaatttgttgagatCCAATTTGATAAGAGTGGAAGAATCTCAGGAGCAGCCATTTGA 642 0.3785 MGTPVNIIVGSHVWVEDPEVSWIDGQVSKINGEDAEIEATNGNKVVAELSKIYPKDTEAPANGVDDMTKLSYLHEPGVLQNLKTRYELNEIYLHMMQQCKGAPFEELSPHVFAVADVAYRAMIKEGKNNSILVSGESGAGKTETTKMLMQYLAFLGGRAATEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKSGRISGAAI 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0230 213 ProSiteProfiles Myosin motor domain profile. 95 213 IPR001609 GO:0003774|GO:0005524|GO:0016459
Ssu4g0230 213 PANTHER MYOSIN 6 213 - -
Ssu4g0230 213 PANTHER MYOSIN-9 6 213 - -
Ssu4g0230 213 Pfam Myosin head (motor domain) 95 213 IPR001609 GO:0003774|GO:0005524|GO:0016459
Ssu4g0230 213 PRINTS Myosin heavy chain signature 128 153 IPR001609 GO:0003774|GO:0005524|GO:0016459
Ssu4g0230 213 PRINTS Myosin heavy chain signature 175 202 IPR001609 GO:0003774|GO:0005524|GO:0016459
Ssu4g0230 213 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 38 213 IPR027417 -
Ssu4g0230 213 Pfam Myosin N-terminal SH3-like domain 9 47 IPR004009 GO:0003774|GO:0005524|GO:0016459
Ssu4g0230 213 Gene3D Kinesin motor domain 12 213 IPR036961 -
Ssu4g0230 213 SMART MYSc_2a 56 213 IPR001609 GO:0003774|GO:0005524|GO:0016459
Ssu4g0230 213 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0230 Ssu-Chr4 3810236 3812993 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0230 1 213 Myosins gene family AT1G54560 79.487 6.30e-125 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0230 K10357 - gmx:100792816 377.096