Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0229 atgaaaattctattaatccAAATCGGCAAAGATCAACTAAAGATTTACAAAAACAACTGCCATATttataaaggaagaaaaacaggAGAAGGAATGGGAGTGAGGTTGAGGaAACCTGGAGGAATCATTGCACTCCTTGACGAAGCTtgCATGTTTCCAAAGTCAACACATGAAACATTTTCAAACAAGCTTTATCAAAATCACAAGCGCTTTATTAAGCCAAAATTATCTCGAACAGATTTCACTATTTCTCATTATGCTGGCAAGTCTGACCAATTTTTAGACAAAAACAAGGATAATGTGGTTCCTGAACATCAAGATTTATTGAGTGCTTCCAAATGTCCTTTTGTAGCAGGTCTTTTTCCTCCATTTGCAGAAGAGACATTCaaatcttcaaaattttcttcaattggtTCTCGATTTAAGCTGCAACTACAGCAATTAATGGAAACACTAAACTCTACGGAGCCTCATTACATTAGATGTGTGAAACCAAACAACCTCCTCAAGCCTGCAATTTTTGAGAATGTCAATATTATGCAACAACTTTGCTGTGGTGGTGTTTTAGAGGCAATCAGAATCAGTTGTGCTGGCTACCCTACTTGCCGTGCtttctttaaatttgtaaaCCGATTTTCCCTTCTTGACCAAGGTCACAGAAGCACAACTGTTTGCCAAAAGATTCTGGAAAAAGTGGGGCTTAAAGGATATCAGATTGGAAAATCAAAGGTATTCCTAAGAGCAGGCTGCAAGAGAACTGGTGCACTTAAAGAAGCAAAGGACAAGCCTGAAAAGAGTGTGGAGGAACTCACTTGGCTTCTTCAACTAGAGAAAAGTTTAAGGACCAACCTAGAAGAATCCAAAGCACAAGAGATAGCAAAACTGCAGAATTCACTGCGGGAGATGCTAAAAAAAGTTGATGAAACCAATGCAATGCTAATAAAGGAGCGAGAGAATGCAAAGAAAGCTATTGAAGAAGCACCTCCTGTTGTCAAAGAAACTCAGGTTATTGTTGAAGACCCTCAGAAGATTGAATCACTAACAGTGGAAGTTGAGGGTCTAAAGAGAGCGGACAGTGGACATATTGGAGTGGAAGCAAAGACAACTTTgGATATGCATAGCCCATCAATGAACCAGAGGGAGTCCTCTGAAGTGGAGGATAAACCACAGAAGACACAAGACATCTTGGCTTATTGGTTATCCAACGCTTCTACTCTTCTCTTGTTACTCCAGCGCACACTTAAGGCAAGTGGTGCTGCTGGAGTGGCTCCTCAACGCCGTTGTTCTTCATCAGGGACCCTGTTTGGGAGGATGACACAAAGTTTCCGTGGAACTCCAGCGGAAGTCAATCTTTCCCTAATCAATGGTAGCATGAGCGGTGGTGTAGATTCATTAAGACAAGTTGAAGCCAATCTTCTTCTAAGACGGGAGTGCTGTTCATTTAGTAATGGAGAATATGTGAAAGCTGGTTTGGCTGAATTGGAGGATTGGAGTTATAAGGCCACAGATGAGGTGCATTACATCACACTGCTGTCATACTTCACAATTCTTTCAGTCATACATAAGAAACCAAAGAAAACGCTGGATGAAATAAGTCATGACCTGTTCCCAGTCCTCAGTATACAGCAGCTATATCGGATAAGCACCTTGTACTGGGATGACAAGTATGGCACACGTAGCGTGTCCCCTGACGTAAAGTCCTTACGAATCATCTGTGCCAGAAAGCTATGA 1731 0.3986 MKILLIQIGKDQLKIYKNNCHIYKGRKTGEGMGVRLRKPGGIIALLDEACMFPKSTHETFSNKLYQNHKRFIKPKLSRTDFTISHYAGKSDQFLDKNKDNVVPEHQDLLSASKCPFVAGLFPPFAEETFKSSKFSSIGSRFKLQLQQLMETLNSTEPHYIRCVKPNNLLKPAIFENVNIMQQLCCGGVLEAIRISCAGYPTCRAFFKFVNRFSLLDQGHRSTTVCQKILEKVGLKGYQIGKSKVFLRAGCKRTGALKEAKDKPEKSVEELTWLLQLEKSLRTNLEESKAQEIAKLQNSLREMLKKVDETNAMLIKERENAKKAIEEAPPVVKETQVIVEDPQKIESLTVEVEGLKRADSGHIGVEAKTTLDMHSPSMNQRESSEVEDKPQKTQDILAYWLSNASTLLLLLQRTLKASGAAGVAPQRRCSSSGTLFGRMTQSFRGTPAEVNLSLINGSMSGGVDSLRQVEANLLLRRECCSFSNGEYVKAGLAELEDWSYKATDEVHYITLLSYFTILSVIHKKPKKTLDEISHDLFPVLSIQQLYRISTLYWDDKYGTRSVSPDVKSLRIICARKL 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0229 576 PANTHER MYOSIN-9 471 570 - -
Ssu4g0229 576 SMART MYSc_2a 1 262 IPR001609 GO:0003774|GO:0005524|GO:0016459
Ssu4g0229 576 PANTHER MYOSIN 393 471 - -
Ssu4g0229 576 PANTHER MYOSIN 250 286 - -
Ssu4g0229 576 Coils Coil 285 326 - -
Ssu4g0229 576 ProSiteProfiles Dilute domain profile. 393 575 IPR002710 -
Ssu4g0229 576 Gene3D - 198 319 - -
Ssu4g0229 576 Pfam Myosin head (motor domain) 38 247 IPR001609 GO:0003774|GO:0005524|GO:0016459
Ssu4g0229 576 PANTHER MYOSIN 471 570 - -
Ssu4g0229 576 PANTHER MYOSIN 37 249 - -
Ssu4g0229 576 ProSiteProfiles Myosin motor domain profile. 1 261 IPR001609 GO:0003774|GO:0005524|GO:0016459
Ssu4g0229 576 SMART DIL_2 440 557 IPR002710 -
Ssu4g0229 576 PANTHER MYOSIN-9 393 471 - -
Ssu4g0229 576 PANTHER MYOSIN-9 37 249 - -
Ssu4g0229 576 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 251 IPR027417 -
Ssu4g0229 576 Pfam DIL domain 471 554 IPR002710 -
Ssu4g0229 576 PANTHER MYOSIN-9 250 286 - -
Ssu4g0229 576 Gene3D Myosin VI head, motor domain, U50 subdomain 100 133 - -
Ssu4g0229 576 Gene3D - 37 155 - -
Ssu4g0229 576 Gene3D Kinesin motor domain 156 194 IPR036961 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0229 Ssu-Chr4 3800468 3808621 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0229 467 571 Myosins gene family AT1G54560 65.217 2.60e-38 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0229 K10357 - cpap:110807751 364.385