Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0222 ATGGTCCCTAATCCAAGGGTTAAGAAGGCCTTTAGCTTTATGAGGGCCTTAGGAATTTCTAATGAGGAGGTGAAGCCAGTGTTGATAAAGCTGTTACGAGTTTATGAAGGAAACTGGGAgcttattgaagatgacaattATCGGACACTTGTAGATGCATACTTCGATTTTGAGATAGACAAGGGAGATGAAGGTGAGAGAAAAGCTAATGTCAGTTGTCATGGTGGAGAAAAATCAATACGGGAACCCCTCTTGGTAGATGATGACGACCAGGATTTATCAACCATGGACAGCTCAGGCCAAATGTTATCTGcaaaagacaataaaatatcacctaaaatttttgaacaaaaaattattgaaacatCTCAAACAATCAAGGTAGATATTAAGCCCAAAACCAGTTCACAAGCACCACATACAACGTTGAGTGAGGTAGAAAAGATCTCAAATTTACCTCGTGTGGCAgctaaagataaaaaatcatatCCTGAGAAAGCATCATCTGCAGGGCATTCTAGTCATTTCGAAAAAGAGCTTGTGAAGCCAAGAACTAAGAAACCCAAGATACAACTTACTTCCACGAATCATAATGGTTTGTCTGATGCGTCAGAGGCAAATCTTTGTCTCAAACCTCTGTTAACTCAGGATCAGGATATGCAAAGTAAAAATGCCTTTTCAGCATGCACCAATAATACCACAGCTTATAATGGAAACATTACGATTGCTTCTACACGTCTGGGAGAAGTAAAAGTATCTTTAAATTGTGACTTTGCCTTGGGACAACCAAACTTCAGTATTCCTAATTTGGATGTTGTTATGAAGTTCATGGACAAGAAGTACCTTAACTCTTGCAACACTGTTGGGACCCAAATTTCTATGGCAGAGCTATTAGATGACCTTTGCAGGAGTTATCTCAAGTTGGGACATCGAAAGGGATTAAATTCCAAACATGCCAATTCACAGCAATATGATAATCAAGGTGAAAGGAACTCCTTTCATTTTATCAGAGACATAACAAAAGGTTCAGAGAAGgtgaaaatatcattaatagATGAAATTGGCAGTGACGACTTGCCAATGTTTAATTACAtaccatataatataatatatcaaagtGCTATTGTAAATATTTCTTTGGCTCGGATTTCGGATGAGGGTTGCTGTTCTGATTGTTCAGGCGACTGTCTTTCCTCATCACTGCCTTGTGCATGTGCTCAGGAAACTGGTGGAGAGTTTGCTTACACTCCGCAAGGTTTGTTGAAAGAAGAATTTCTAACAGCTTGTATGTCTATGAAGAATGAACCTCAAGATCATCATTATGTGTACTGTCAAGAGTGCCCTTTAGGGAAGTCCAAGAATGAGTACATGCCCGAACGATGCAAGGGGCATATGGTTAggaaatttataaaggaatgttGGAGGAAATGTGGATGTGACATGCATTGCGGGAATCGGATAGTGCAACGAGGTATAACATGCAAATTGCAGGTGTTCTTAACTCGTGAAGGTAAAGGCTGGGGCCTTAGAACGTTAGAAGATTTACCAAAAGGAACTTTCGTATGTGAATATGTTGGAGAAATATTAACCAATATGGAGTTATACGTCAGGATTATGCAGGATAGTGGCAAAGACAGACATACATATCCTGTAACTCTTGATGCGGACTGGGGCTCAGAAAAGGGGTTAAAGGATGAGGAGGCACTATGTTTAGATGCAACAAATAATGGAAATGTTGGAAGGTTCATCAATCATAGATGCTATGATGCTAATCTCATAGACATTCCTGTCGAAATAGAGTCTCCGGATCACCATTATTATCATCTTGCCTTCTTTACCAACAGGAAAGTGAATGCATATGAGGAGTTGACATGGGATTATGGTATTGATTTTGATGATCACGACCATCCTATTAAGGCATTTCGGTGTTGTTGTGGAAGCGTCTTCTGCTGTGATAAGAAACAGAAAGggaaaggaaaaatagaaaatcaggTTCATGTAACTAGAGGAATGTCTGAACTCTAA 2025 0.3694 MVPNPRVKKAFSFMRALGISNEEVKPVLIKLLRVYEGNWELIEDDNYRTLVDAYFDFEIDKGDEGERKANVSCHGGEKSIREPLLVDDDDQDLSTMDSSGQMLSAKDNKISPKIFEQKIIETSQTIKVDIKPKTSSQAPHTTLSEVEKISNLPRVAAKDKKSYPEKASSAGHSSHFEKELVKPRTKKPKIQLTSTNHNGLSDASEANLCLKPLLTQDQDMQSKNAFSACTNNTTAYNGNITIASTRLGEVKVSLNCDFALGQPNFSIPNLDVVMKFMDKKYLNSCNTVGTQISMAELLDDLCRSYLKLGHRKGLNSKHANSQQYDNQGERNSFHFIRDITKGSEKVKISLIDEIGSDDLPMFNYIPYNIIYQSAIVNISLARISDEGCCSDCSGDCLSSSLPCACAQETGGEFAYTPQGLLKEEFLTACMSMKNEPQDHHYVYCQECPLGKSKNEYMPERCKGHMVRKFIKECWRKCGCDMHCGNRIVQRGITCKLQVFLTREGKGWGLRTLEDLPKGTFVCEYVGEILTNMELYVRIMQDSGKDRHTYPVTLDADWGSEKGLKDEEALCLDATNNGNVGRFINHRCYDANLIDIPVEIESPDHHYYHLAFFTNRKVNAYEELTWDYGIDFDDHDHPIKAFRCCCGSVFCCDKKQKGKGKIENQVHVTRGMSEL 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0222 674 Gene3D - 1 58 IPR043017 -
Ssu4g0222 674 MobiDBLite consensus disorder prediction 131 188 - -
Ssu4g0222 674 SMART preset_2 336 478 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Ssu4g0222 674 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 667 - -
Ssu4g0222 674 Pfam Pre-SET motif 339 486 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Ssu4g0222 674 MobiDBLite consensus disorder prediction 152 186 - -
Ssu4g0222 674 ProSiteProfiles Pre-SET domain profile. 388 491 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Ssu4g0222 674 Gene3D SET domain 314 638 IPR046341 -
Ssu4g0222 674 Pfam SET domain 506 628 IPR001214 GO:0005515
Ssu4g0222 674 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 666 IPR025776 -
Ssu4g0222 674 CDD SET_SETDB-like 360 628 - -
Ssu4g0222 674 ProSiteProfiles SET domain profile. 494 628 IPR001214 GO:0005515
Ssu4g0222 674 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR2-LIKE PROTEIN 1 667 - -
Ssu4g0222 674 MobiDBLite consensus disorder prediction 131 148 - -
Ssu4g0222 674 SMART set_7 494 634 IPR001214 GO:0005515
Ssu4g0222 674 SUPERFAMILY SET domain 346 650 IPR046341 -
Ssu4g0222 674 Pfam Ubiquitin-binding WIYLD domain 6 56 IPR018848 GO:0018024
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0222 Ssu-Chr4 3696384 3706748 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0222 335 650 Su(var)3-9 homologs AT5G04940 27.083 8.99e-32 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Ssu4g0222 Pre-SET 5e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0222 - - gmx:100802372 998.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0222 4 3696384 3706748 Ssu7g2255 7 44481190 44482972 PCT