Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0219 ATGTCTTCATCTTCTCGTGTTCTTCCCACTCCCGtagaaaacaaatatatgaAACCCCCAGATTCTTTTCAGCTTTCACCCATCAAAGACATGACTGCAAATTCTGCCTCATCAAATTCAATCAGAAGTGCTGGGAAAATGTTCTCATCACCTTCTGAATGTCCTGATGACATCCCTTTTTCCTCTGTTTCACAGCATGATAGGCAATATCAAGATCCCCCCTTTGTTTCTCAGACATTGGGTGACAATGTGTCTTCCAAAATACATTCAACAACATTCATTTCTCACCCTCAAGAAAGTGAAGACATTTCCTGGGGACCATATCCCTTTCAGGATATTCCAGGTTTTCCTGAAAATGTTTCTGTCCAGCATGATCAGGTGGAAAACAGTGCTTGTTACATAAATGATGACAATGTGAAAAGATCTGATTTTGGGGAGTGGGTTGATCAGTTAATGTCAATTGATGATTCTCTTCACCCAAACTGGAGTCAGCTTCTTGGTGATGACAATGTAGCAGAACCAAAACTGAAGGCATCTCAGGTTCCTCAGCAGCAGCATATACCATCTGGAGAAGTTCTTTGTAATTCAGCAGCAACTGCACCGCAGACTAAGCCTAGAATGCGTTGGACTCCAGAACTTCATGAGGCCTTCGTGGAAGCAGTCAATCAACTTGGTGGTAGTGAGAAGGCTACTCCGAAGGGTGTGTTGAATCTAATGAAAGTTGAGGGCCTTACCATCTATCATGTAAAAAGCCATTTACAGAAGTATAGAACTGCCAGATACAAACCAGAGTCATCAGAAGGAACGTCTGACAAAAAGGTGACTCCAATAGAAGAAATGAAATCTCTAGACTTGAAAACGAGTAAGGGGATCACTGAAGCATTACGATTGCAGATGGAACTCCAGAAGCGACTTCACGAACAACTAGAGATCCAAAGAAAGCTGCAGATTCAAATTGAAGACCAAGGGAAACGTCTTCAGATGATGTTTGAGAAACAGAGAGAGATGGGTGACAGCAAGGGTAAGGGTTCATCCTCCTCCCCTTTGGACGAGCCTTCTGCTGCACCATCAGACACCCTGCTGGTTCCTTCTCCTCCAGTAGAAATCTCGAACGAGGAAAGTGACAAATTTGGAAGCAATGGTAACATTCCGAAAGCCATGCCTGAAGAAAGTTCCCAGGATGCAAGCCCAAAGCAAATGGGTGGTGAAGCTGAAGTGATCAATGAAGATGAAGCTGCACCCCCCACAAAACGGGTGAAAAGTTCATGA 1269 0.4334 MSSSSRVLPTPVENKYMKPPDSFQLSPIKDMTANSASSNSIRSAGKMFSSPSECPDDIPFSSVSQHDRQYQDPPFVSQTLGDNVSSKIHSTTFISHPQESEDISWGPYPFQDIPGFPENVSVQHDQVENSACYINDDNVKRSDFGEWVDQLMSIDDSLHPNWSQLLGDDNVAEPKLKASQVPQQQHIPSGEVLCNSAATAPQTKPRMRWTPELHEAFVEAVNQLGGSEKATPKGVLNLMKVEGLTIYHVKSHLQKYRTARYKPESSEGTSDKKVTPIEEMKSLDLKTSKGITEALRLQMELQKRLHEQLEIQRKLQIQIEDQGKRLQMMFEKQREMGDSKGKGSSSSPLDEPSAAPSDTLLVPSPPVEISNEESDKFGSNGNIPKAMPEESSQDASPKQMGGEAEVINEDEAAPPTKRVKSS 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0219 422 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 202 261 IPR017930 -
Ssu4g0219 422 SUPERFAMILY Homeodomain-like 202 258 IPR009057 -
Ssu4g0219 422 Gene3D - 203 262 - -
Ssu4g0219 422 MobiDBLite consensus disorder prediction 27 47 - -
Ssu4g0219 422 MobiDBLite consensus disorder prediction 1 69 - -
Ssu4g0219 422 MobiDBLite consensus disorder prediction 333 422 - -
Ssu4g0219 422 Pfam MYB-CC type transfactor, LHEQLE motif 291 335 IPR025756 -
Ssu4g0219 422 Pfam Myb-like DNA-binding domain 206 257 IPR001005 -
Ssu4g0219 422 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 2 422 - -
Ssu4g0219 422 MobiDBLite consensus disorder prediction 55 69 - -
Ssu4g0219 422 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 2 422 IPR044848 GO:0003700
Ssu4g0219 422 Coils Coil 292 312 - -
Ssu4g0219 422 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 204 258 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0219 Ssu-Chr4 3681788 3684619 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0219 43 365 G2-like Transcription Factor Family AT3G04450 46.132 1.15e-80 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Ssu4g0219 Myb_DNA-binding 1.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0219 - - gmx:100803267 665.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0219 4 3681788 3684619 Ssu4g0219 4 3681788 3684619 ECH
Ssu4g0219 4 3681788 3684619 Ssu7g2252 7 44410149 44412495 PCT