Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0211 ATGAGGACTCCTTGTTGTGAGAGGATGGGATTGAAGAAGGGACCTTGGACTGCTGAAGAAGATCAGATATTGATTTCTCATATTCAACGATATGGCCATGGAAACTGGCGTGCCCTTCCTAAACAAGCAGGTTTGTTAAGGTGTGGCAAGAGTTGTAGGCTTCGTTGGATAAATTACTTGAGGCCAGATATTAAACGAGGGAAATTCAgcaaggaagaagaagaaaccatCCTAAAGCTACATGAAATTCTTGGAAATAGATGGTCGGCTATTGCGGCAAGCTTACCCGGAAGAACGGACAACGAAATAAAGAATTTTTGGCATACCCATTTGAAGAAGAGGACCGAGAAAAGTGGAGTGCAGAATGTCAATGCTTCCTCACATATCTTGCAAGAGGCACAAGCAGATAGTTCGAACGCATCAAGTGCTGCTTATAGTGTCGCTGGAAATGTTATGATTGCCAATTATGGTTTATCCTCAAGGAAGAATCCACCGATTGTAGGTACAGGATTTTACGGTGCTGTCTCCTCAGGTACTTTAGGAGAAATTGTGGGCAATCATGGTTCCTGTCAGCTCAGTGAAGAAATGGAATTTTGGTACAATATTTTCATCAAGTCAGGGCAACCATCATga 633 0.4107 MRTPCCERMGLKKGPWTAEEDQILISHIQRYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGKFSKEEEETILKLHEILGNRWSAIAASLPGRTDNEIKNFWHTHLKKRTEKSGVQNVNASSHILQEAQADSSNASSAAYSVAGNVMIANYGLSSRKNPPIVGTGFYGAVSSGTLGEIVGNHGSCQLSEEMEFWYNIFIKSGQPS 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0211 210 Pfam Myb-like DNA-binding domain 66 111 IPR001005 -
Ssu4g0211 210 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Ssu4g0211 210 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Ssu4g0211 210 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Ssu4g0211 210 PANTHER MYB TRANSCRIPTION FACTOR 2 208 - -
Ssu4g0211 210 Gene3D - 68 114 - -
Ssu4g0211 210 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Ssu4g0211 210 CDD SANT 68 111 IPR001005 -
Ssu4g0211 210 Gene3D - 12 65 - -
Ssu4g0211 210 SUPERFAMILY Homeodomain-like 9 107 IPR009057 -
Ssu4g0211 210 CDD SANT 15 60 IPR001005 -
Ssu4g0211 210 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Ssu4g0211 210 SMART sant 65 113 IPR001005 -
Ssu4g0211 210 SMART sant 12 62 IPR001005 -
Ssu4g0211 210 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 2 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0211 Ssu-Chr4 3609826 3611027 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0211 2 203 MYB Transcription Factor Family AT2G31180 49.145 1.75e-71 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu4g0211 Myb_DNA-binding 1.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0211 K09422 - gmx:102663040 349.362