Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0205 ATGTACGAAGAAGCAGCCCTGAAGAAGCAACAATACCAAGTGTTGGAAGAAATCGGTCGAGGTCGATTTGGCACCGTGTTCCGCTGCTTCCACCCAATTTCAAACCAATCCTATGCCTTCAAACTCATCGACAAGCGCCTCCTCACCGATTCCACGGACCGCCACTGCCTCGAAATCGAGGCCAAGGCCATGACCTTCCTCCCTCCCCACCCCAACATTCTCCAAATCATCGATGCCTTCGAAGACGCCGAATTCTCCTCCATCATAGTCGGACTCTGCCAGCCGCGCACCCTCTTCGACCGCATCGCCGACGGCCCCTTGCCGGAGCCCCACGCCGCCTCCCTCGCGAGGCAGCTTCTAGAAGCCGTCGCTCACTGCCACGCGCTCGGACTCGCGCACAGGGACATCAAGCCCGACAACCTCTTGTTCGACGACGGGAACAACCTTAGACTCTCGGACTTCGGTTCCGCGGAGTGGTTCGGTGAGGGGAGGAGCATGAGCGGTGTGGTGGGCACGCCGTATTACGTGGCGCCCGAAGTGCTTATGGGGAGACAGTACGATGAGAAAGTGGATGTTTGGAGCAGCGGTGTGATTCTGTACACAATGTTGGCTGGGATTCCTCCCTTTTACGGAGACTCTGCCGCTGAGATCTTTGAGGCTGTTTTAAGGGCCAATCTTAGGTTTCCCACAAGAATTTTTAGGACTGTGTCTGCCCCTGCTAAGGATCTCCTTAGGAAGATGATTTGTAGGGATCCCTCTAGGCGCATATCCGCACACCAGGCCTTGAGACACCCGTGGATCTTGAGTCGGGGTGTGACGAGTGGTGATCTATCTTGA 837 0.5615 MYEEAALKKQQYQVLEEIGRGRFGTVFRCFHPISNQSYAFKLIDKRLLTDSTDRHCLEIEAKAMTFLPPHPNILQIIDAFEDAEFSSIIVGLCQPRTLFDRIADGPLPEPHAASLARQLLEAVAHCHALGLAHRDIKPDNLLFDDGNNLRLSDFGSAEWFGEGRSMSGVVGTPYYVAPEVLMGRQYDEKVDVWSSGVILYTMLAGIPPFYGDSAAEIFEAVLRANLRFPTRIFRTVSAPAKDLLRKMICRDPSRRISAHQALRHPWILSRGVTSGDLS 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0205 278 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE 2 6 273 - -
Ssu4g0205 278 Pfam Protein kinase domain 12 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g0205 278 PANTHER SERINE/THREONINE-PROTEIN KINASE 6 273 - -
Ssu4g0205 278 ProSitePatterns Serine/Threonine protein kinases active-site signature. 131 143 IPR008271 GO:0004672|GO:0006468
Ssu4g0205 278 CDD STKc_CAMK 11 266 - -
Ssu4g0205 278 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Ssu4g0205 278 ProSiteProfiles Protein kinase domain profile. 12 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g0205 278 Gene3D Transferase(Phosphotransferase) domain 1 96 274 - -
Ssu4g0205 278 Gene3D Phosphorylase Kinase; domain 1 2 93 - -
Ssu4g0205 278 SMART serkin_6 12 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g0205 278 SUPERFAMILY Protein kinase-like (PK-like) 7 269 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0205 Ssu-Chr4 3438759 3439701 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0205 9 272 EF-hand Containing Proteins AT2G38910 42.537 6.84e-71 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Ssu4g0205 Pkinase 6e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0205 - K08794 gmx:547573 439.113
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0205 4 3438759 3439701 Ssu7g1564 7 32830680 32831601 ECH
Ssu4g0205 4 3438759 3439701 Ssu4g0205 4 3438759 3439701 ECH