Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0204 ATGGAGCAATCGGTTTTGGATGACATAATCAACCGCCTCCTCGAAGTTCGTACCCGACCGGGGAAGCAGGTGCAGCTGTCGGAGTCCGAGATCCGGCAACTCTGCGTAGTTTCCAGAGAGATTTTCTTGCAACAACCTAATTTATTGGAGCTCGAAGCACCTATCAAGATttgtgGTGATGTACATGGGCAATATTCTGACCTTTTAAGGCTTTTTGAGTATGGTGGATTACCTCCTGAAGCCAACTACTTGTTTTTGGGGGATTATGTGGATCGAGGGAAGCAGAGTTTAGAAACAATTTGCCTTCTCcttgcttataaaataaaatatcaggAAAACTTTTTCCTGTTAAGGGGAAACCATGAGTGTGCTTCTATAAACCGGATATATGGGTTTTATGATGAGTGTAAGAGAAGGTTCAATGTAAGGTTATGGAAGATATTTACAGACTGCTTCAATTGCCTGCCTGTGGCAGCCCTTGTTGATGAAAAGATTTTGTGTATGCATGGAGGACTTTCTCCTGACTTACATAATTTGGAGCAGATTAGAAATCTACAGCGACCCACTGATGTTCCTGATACAGGTTTGCTTTGTGATCTTCTTTGGTCTGATCCAAGCAAAGATGTTCAAGGATGGGGAATGAATGACAGGGGAGTTTCATATACATTTGGTGCTGATAAGGTCTCTGAGTTTCTTCAGAAACATGATCTTGATCTTATTTGTCGTGCTCATCAGGTTGTGGAAGATGGATACGAGTTCTTTGCTAATCGGCAGCTTGTAACAATATTTTCAGCTCCTAATTATTGTGGGGAGTTTGACAATGCTGGTGCTATGATGAGTGTTGATGAGACACTAATGTGCTCTTTCCAAATATTGAAGCCAGCTGATAAAAAAGCAAAGATCAATTTTGGAAGTACAACCACTGCTAAGCCTGGAAACTCTCCAGCAGGTGTAAAGTCCTTCCTGGGAGCGAaagtatga 981 0.4088 MEQSVLDDIINRLLEVRTRPGKQVQLSESEIRQLCVVSREIFLQQPNLLELEAPIKICGDVHGQYSDLLRLFEYGGLPPEANYLFLGDYVDRGKQSLETICLLLAYKIKYQENFFLLRGNHECASINRIYGFYDECKRRFNVRLWKIFTDCFNCLPVAALVDEKILCMHGGLSPDLHNLEQIRNLQRPTDVPDTGLLCDLLWSDPSKDVQGWGMNDRGVSYTFGADKVSEFLQKHDLDLICRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPADKKAKINFGSTTTAKPGNSPAGVKSFLGAKV 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0204 326 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 1 320 - -
Ssu4g0204 326 Pfam Serine-threonine protein phosphatase N-terminal domain 6 52 IPR031675 -
Ssu4g0204 326 ProSitePatterns Serine/threonine specific protein phosphatases signature. 117 122 IPR006186 GO:0016787
Ssu4g0204 326 Gene3D - 1 305 IPR029052 -
Ssu4g0204 326 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 1 320 - -
Ssu4g0204 326 SUPERFAMILY Metallo-dependent phosphatases 18 298 IPR029052 -
Ssu4g0204 326 Pfam Calcineurin-like phosphoesterase 54 246 IPR004843 GO:0016787
Ssu4g0204 326 PRINTS Serine/threonine phosphatase family signature 83 110 IPR006186 GO:0016787
Ssu4g0204 326 PRINTS Serine/threonine phosphatase family signature 150 176 IPR006186 GO:0016787
Ssu4g0204 326 PRINTS Serine/threonine phosphatase family signature 258 274 IPR006186 GO:0016787
Ssu4g0204 326 PRINTS Serine/threonine phosphatase family signature 54 81 IPR006186 GO:0016787
Ssu4g0204 326 PRINTS Serine/threonine phosphatase family signature 179 206 IPR006186 GO:0016787
Ssu4g0204 326 PRINTS Serine/threonine phosphatase family signature 236 256 IPR006186 GO:0016787
Ssu4g0204 326 PRINTS Serine/threonine phosphatase family signature 116 140 IPR006186 GO:0016787
Ssu4g0204 326 SMART pp2a_7 26 296 IPR006186 GO:0016787
Ssu4g0204 326 CDD MPP_PP1_PPKL 5 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0204 Ssu-Chr4 3423204 3427682 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0204 33 239 Calmodulin-binding Proteins AT5G63870 29.435 2.31e-26 104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0204 4 3423204 3427682 Ssu7g1563 7 32795864 32801282 ECH
Ssu4g0204 4 3423204 3427682 Ssu4g0204 4 3423204 3427682 ECH