Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0203 ATGAGTTCCTCATTCTTTTCTCCAGACTCAAACTACGAACTCCCTTACGAGTACTCTTGCTCTTCATTCACATGTCACAACCAGTACTCCCTTCCTTTCAACGAAAATGACTCGCAAGAAATGCTCCTTTACGAAGTCCTGGCACAGGCCGGTGCAAATTCCTCGGAAGCATCGACAACATCATCGGCGTCTCATCGTTCAAGCGTTGCCGAAGCGGAGGAGGCAGTTTCGTACAGAGGGGTTCGAAGGAGGCCGTGGGGGAAGTACGCGGCGGAGATAAGGGACTCCACGCGGAAAGGAGTGAGGGTTTGGTTGGGAACCTTCGACACTGCCGAGGCTGCGGCTTTGGCATACGACCAGGCTGCGTTGGCGATGCGAGGGTCGATGGCTGTGTTGAATTTCCCAGCCGAGATGGTTCGGCAATCGCTTCGGAACATGGAGTATGGTTTTGAGGAAGGGTGCTCTCCCGTGCTGGAGCTAAAGAAGAGGCACTCCATGACGAGGAAATCGGAGGGGAAGAAGGTGAAAAAGAAGCAGGAAGAGGGGATGTCCCAAAATGTGATGGTCTTGGAGGACTTAGGGGCAGAGTATTTGGAACAACTTCTCACTCTGTCCCTGGATATGGATGCTTGTTAG 636 0.5267 MSSSFFSPDSNYELPYEYSCSSFTCHNQYSLPFNENDSQEMLLYEVLAQAGANSSEASTTSSASHRSSVAEAEEAVSYRGVRRRPWGKYAAEIRDSTRKGVRVWLGTFDTAEAAALAYDQAALAMRGSMAVLNFPAEMVRQSLRNMEYGFEEGCSPVLELKKRHSMTRKSEGKKVKKKQEEGMSQNVMVLEDLGAEYLEQLLTLSLDMDAC 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0203 211 PRINTS Ethylene responsive element binding protein signature 78 89 IPR001471 GO:0003700|GO:0006355
Ssu4g0203 211 PRINTS Ethylene responsive element binding protein signature 101 117 IPR001471 GO:0003700|GO:0006355
Ssu4g0203 211 ProSiteProfiles AP2/ERF domain profile. 77 135 IPR001471 GO:0003700|GO:0006355
Ssu4g0203 211 CDD AP2 78 136 IPR001471 GO:0003700|GO:0006355
Ssu4g0203 211 Gene3D AP2/ERF domain 77 137 IPR036955 GO:0003700|GO:0006355
Ssu4g0203 211 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B-LIKE 8 203 - -
Ssu4g0203 211 Pfam AP2 domain 78 127 IPR001471 GO:0003700|GO:0006355
Ssu4g0203 211 SMART rav1_2 77 141 IPR001471 GO:0003700|GO:0006355
Ssu4g0203 211 SUPERFAMILY DNA-binding domain 78 137 IPR016177 GO:0003677
Ssu4g0203 211 PANTHER DNA-BINDING DOMAIN 8 203 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0203 Ssu-Chr4 3406848 3407483 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0203 31 202 AP2-EREBP Transcription Factor Family AT3G23240 56.000 1.12e-64 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu4g0203 AP2 1.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0203 K14516 - gmx:100787732 253.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0203 4 3406848 3407483 Ssu7g1561 7 32769740 32770309 ECH
Ssu7g2217 7 43744929 43745663 Ssu4g0203 4 3406848 3407483 ECH
Ssu4g0203 4 3406848 3407483 Ssu4g0203 4 3406848 3407483 ECH