Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0202 ATGTCTAAAAATCCAAAAGTTTTCTTTGATATTCTAATTGGAAAGATGAAAGGTGGGCGAGTAGTGATGGAGTTGTTTGCTGATGTAACCCCAAAAACAGCTGAAAACTTCAGGGCACTCTGCACTGGGGAAAAGGGGATTGGACAATCTGGGAAACCTTTGCACTACAGAGGATCCACATTTCATCGTATTATCCCAGAATTTATGTGTCAGGGAGGAGATTTTACGAGAGGGAATGGGACGGGGGGAGAGTCGATCTACGGTTCCAAATTTCAAGATGAGAATTTCAAGTTGAAGCATACTGGCCCTGGTATTCTCTCCATGGCAAATGCTGGACCCCATACAAATGGTTCTCAGTTCTTCATTTGTACTACAAAGACACCGTGGCTTGATGGAAAACATGTTGTGTTTGGAAAAGTTGTTGATGGATACAGCGTGGTGAAGGAGATGGAGAAGGTGGGTTCAGGAAGTGGCAGGACATCAGAACCGGTAGTAATCGAAGACTGTGGGCAGATAGAAGAGAAATGA 528 0.4394 MSKNPKVFFDILIGKMKGGRVVMELFADVTPKTAENFRALCTGEKGIGQSGKPLHYRGSTFHRIIPEFMCQGGDFTRGNGTGGESIYGSKFQDENFKLKHTGPGILSMANAGPHTNGSQFFICTTKTPWLDGKHVVFGKVVDGYSVVKEMEKVGSGSGRTSEPVVIEDCGQIEEK 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0202 175 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 8 171 IPR002130 GO:0000413|GO:0003755
Ssu4g0202 175 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 2 174 - -
Ssu4g0202 175 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 56 73 IPR020892 GO:0003755|GO:0006457
Ssu4g0202 175 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 61 73 IPR002130 GO:0000413|GO:0003755
Ssu4g0202 175 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 132 147 IPR002130 GO:0000413|GO:0003755
Ssu4g0202 175 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 119 131 IPR002130 GO:0000413|GO:0003755
Ssu4g0202 175 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 104 119 IPR002130 GO:0000413|GO:0003755
Ssu4g0202 175 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 25 40 IPR002130 GO:0000413|GO:0003755
Ssu4g0202 175 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP63 2 174 - -
Ssu4g0202 175 PIRSF Peptidylpro_ismrse 1 175 IPR024936 GO:0003755
Ssu4g0202 175 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 15 170 IPR002130 GO:0000413|GO:0003755
Ssu4g0202 175 SUPERFAMILY Cyclophilin-like 3 172 IPR029000 -
Ssu4g0202 175 Gene3D - 1 175 IPR029000 -
Ssu4g0202 175 CDD cyclophilin_ABH_like 5 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0202 Ssu-Chr4 3361292 3361819 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0202 19 153 U-box Gene Family AT5G67530 50.000 6.12e-33 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0202 K01802 - gmx:100306275 340.887
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0202 4 3361292 3361819 Ssu4g0202 4 3361292 3361819 ECH