Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0201 ATGGCGAACCGGTGGTGGACCGACACAGTTGGTGTTGCCGGGGTTGACACCTCATCTTCCCCCATCAAAAAACCGGATCTGGGTTTCTTCATAAACGACACCGCATCGGCACCAGCTGTGAACCGCGGCAAAGAAGAGGGAGAGGCGGAGAAACAAAACAACGCGGAGCCCAACGAAGGAGACACGGAGACATCCACCACGCGCAGGCCCAGGGGCCGCCCACCAGGCTCGAAGAACAAGCCCAAGCCGCCAGTATTTGTGACCCGAGACAGCCCCAACGCTCTCCAAAGCCACGTCATGGAGATAGCGAGCGGAGCTGACATCGCCGACAGCTTGATTCAGTTTGCGACAAGGCGGCAACGAGGTGTCTGCGTCCTGAGCGCCGTAGGCGCCGTCGCGAACGTCACTCTCCGGCAGCCGACGGCCCCCGGCGCCGTGATGGCGCTCCAGGGCCGGTTCGAGATCGTATCGTTGACCGGTTCGTTCTTGCCCGGAAGGTCCCCGCCGGGTTTAACAGTTTACATGGCGGGCGGTCAGGGACAGGTTATTGGGGGTGGAGTGGTGGGTCCGCTGGTGGCATCAGGAACGGTTACGGTAATGGTGGCTGCGTTTTCCAATGCTGTGTATGAGAGATTACCCGTTGAGGATGAAGATGAGGAGGGTGTGGGACACGGGTTAGGAAATGGTGGAAGAGAGGGTTCATCCTCCGATCCGGTCTATCATGATAATTTGGGTGCTCCAAATATTGTGCCACAGATGAACCGTGAAGCTTATTCTCATTGGTCTCTTGCTCAAGCCGGGCCACCCTTTTGA 813 0.583 MANRWWTDTVGVAGVDTSSSPIKKPDLGFFINDTASAPAVNRGKEEGEAEKQNNAEPNEGDTETSTTRRPRGRPPGSKNKPKPPVFVTRDSPNALQSHVMEIASGADIADSLIQFATRRQRGVCVLSAVGAVANVTLRQPTAPGAVMALQGRFEIVSLTGSFLPGRSPPGLTVYMAGGQGQVIGGGVVGPLVASGTVTVMVAAFSNAVYERLPVEDEDEEGVGHGLGNGGREGSSSDPVYHDNLGAPNIVPQMNREAYSHWSLAQAGPPF 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0201 270 Gene3D - 96 220 - -
Ssu4g0201 270 ProSiteProfiles PPC domain profile profile. 92 230 IPR005175 -
Ssu4g0201 270 MobiDBLite consensus disorder prediction 215 246 - -
Ssu4g0201 270 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 19 8 239 - -
Ssu4g0201 270 MobiDBLite consensus disorder prediction 43 68 - -
Ssu4g0201 270 MobiDBLite consensus disorder prediction 1 90 - -
Ssu4g0201 270 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 8 239 IPR014476 GO:0003680
Ssu4g0201 270 Pfam Plants and Prokaryotes Conserved (PCC) domain 97 206 IPR005175 -
Ssu4g0201 270 SUPERFAMILY AF0104/ALDC/Ptd012-like 93 217 - -
Ssu4g0201 270 CDD DUF296 98 170 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0201 Ssu-Chr4 3349968 3350780 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0201 1 270 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 50.333 2.71e-73 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0201 - - aprc:113863548 328.946