Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0200 ATGGAAAGAGGGTTGCTGTTGGTTATGGTGCTTTCTGTTTGTGCCATCGACGTGGGATATGCACAGTGCAACTGTGATGAGGAAGGGTTTTGGAGCAGACAGAACGTGCTCGTTTGCCAGAAAGTGAGTGACTTTTTCATTGCCATTGCTTATTTTTCCATTCCCATTGAGCTCCTTTACTTTGTGAGCTGCTCCAACTTTCCCTTCAAATTGGTATTCCTTCAATTCATTGCCTTCATAGTTCTCTGTGGATTGACCCATTTACTCAATGCCTATACTTACTATGGCCCCCACTCCTTCCAGTTGTTTCTTTCCCTCACTGTTGCTAAGTTCCTCACTGCTCTTGTCTCCTGTGCCACTGCCATTACCTTTCCCACCCTCATTCCCCTTCTGCTGAAAATCAAAGTGAGGGAGCTATTCTTGAGGCAGAATGTGTTGGAATTGGGCCAAGAGGTTGGGATGATGAAGAAACAGAAGGAAGCTAGTTGGCATGTTAGGATGCTCACCTGTGAGATTAGGAAGTCTCTGGATAAGCATACCATCTTGTACACCACCCTTGTTGAGCTTTCCAAGGCATTGGATTTGCACAATTGTGCAGTTTGGATGCCTGATGATGACAGGAGAGAAATGCATTTGACTCATGAGTTGAAACCAAGCTCAGCAAGGAGTTTTCACAATTCTATTCCTATTAGTGATCCGGATGTGTTGGACATAAAGAAGAGCATAGGGGTGTGGATTTTGAGGCCTGATTCTGCACTAGGAGCTGCAAGTAGTGGTGGTGGATCTGGGGAATCGGGTGCTGTGGCTGCCATTCGCATGCCAATACTTCACGTTTCCAATTTCAAAGGAGGGACACCTGAGTTGGTTGAAACATCTTATGGTGTACTGGTTTTGGTACTTCCAAATTCAAACTCAAGGGTTTGGACCTCCCATGAAATGGAGATAGTGGAAGTGGTTGCTGACCAGGTGGCTGTGGCCTTGTCTCATGCATCTGTTCTTGAAGAGTCTCAGCTTATGAGCCAGAAACTTGCAGAGCAAAACTGGGCTTTGCAACAGGCTCAAAAGAATGCAATGATGGCCAGGAAGGCAAGGAGCTCGTTTGAGAAAGTTATGAGTCATGGAATGCGGAGACCTATGCATTCAATCCTGGGCTTGCTTTCAATGTTTCAAGAGGATAACATAAGATCTGAACAGAAGATTGTTATCGActcaattttgaaagttagcAATGCACTCTCGCGATTGATTAATGATGTGATGGAGATTTCAGCAAATGACCATGGAAGCTTCCTGTTGGAGATGAAACCTTTTCATCTACATTCCATGATGAGGGAGGCTTCTTGCACCGCCAAGTGTTTGTGTATGTATAAAGGCTTTGGACTTGAACTTGATGTTGACAAGTCTTTGCCTGATCTGGTCATAGGCGATGAGGCAAGGTCTTTCCAAGTAATTTTACACATGATTGGCCATTTATTGAACATATATGATAAAGGGACTCtcatttttcaagtttatctTGAAAGTGATAGTGGAGATAAAGATGATAGAAGATTTGGAATATGGAGATCAAGCATGCAAAATAATTatgtacatataaaatttaagtttcagATAAATGGTATTAGTTCCCATTCAGATGAATCAGTTTCAactagaaattatactggtagAAGGCCCTGCAACAATGAACCTGAGGAGGGCCTGAGCTTCAGCATGTGCAAAACGCTGGTGCAGATGATGCAAGGTAGTATTTGGATATCAATGAACTCTCTGGGTTTGGCACAAGGAATAACACTTCTTCTCAAGTTTCAGATAGGATCATCACATGAAAGATTCATTCTTGCTCCTAAAGATTTTTCAAACTCTCAATTTAGAGGGCTTAAGGTTGTGTTAGCCGATGATGATGATGTAAACAGGACTGTGACCAAGAAGCTGCTTGAGAAACTGGGGTGCCAAGTAATTGCTGTTTCATCAGGATTCGAGTGTCTTGGTGTTATAAGTGCCTCCGGTAACTCATTCAAAATTATTCTGTTGGATCTTCACATGCCTGAAATGGATGGTTTTGAAGTTGCAAGAAGGATTCGGAAATTCCAAAGCCATAATTGGCCCTTGATCATAGCTTTTACTGCAAGTGCAGAAGAACACATAAAGGAGAGATGTCTACAGGTGGGAATGAATGGATTGATTCGAAAACCTATCCTCCTTCATGAGATAGCAGATGAACTTGGGACAGTCCTGCAACGTGCAGGTGAAAAATTGTGa 2262 0.4164 MERGLLLVMVLSVCAIDVGYAQCNCDEEGFWSRQNVLVCQKVSDFFIAIAYFSIPIELLYFVSCSNFPFKLVFLQFIAFIVLCGLTHLLNAYTYYGPHSFQLFLSLTVAKFLTALVSCATAITFPTLIPLLLKIKVRELFLRQNVLELGQEVGMMKKQKEASWHVRMLTCEIRKSLDKHTILYTTLVELSKALDLHNCAVWMPDDDRREMHLTHELKPSSARSFHNSIPISDPDVLDIKKSIGVWILRPDSALGAASSGGGSGESGAVAAIRMPILHVSNFKGGTPELVETSYGVLVLVLPNSNSRVWTSHEMEIVEVVADQVAVALSHASVLEESQLMSQKLAEQNWALQQAQKNAMMARKARSSFEKVMSHGMRRPMHSILGLLSMFQEDNIRSEQKIVIDSILKVSNALSRLINDVMEISANDHGSFLLEMKPFHLHSMMREASCTAKCLCMYKGFGLELDVDKSLPDLVIGDEARSFQVILHMIGHLLNIYDKGTLIFQVYLESDSGDKDDRRFGIWRSSMQNNYVHIKFKFQINGISSHSDESVSTRNYTGRRPCNNEPEEGLSFSMCKTLVQMMQGSIWISMNSLGLAQGITLLLKFQIGSSHERFILAPKDFSNSQFRGLKVVLADDDDVNRTVTKKLLEKLGCQVIAVSSGFECLGVISASGNSFKIILLDLHMPEMDGFEVARRIRKFQSHNWPLIIAFTASAEEHIKERCLQVGMNGLIRKPILLHEIADELGTVLQRAGEKL 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0200 753 Gene3D - 627 752 - -
Ssu4g0200 753 CDD HATPase_ETR2_ERS2-EIN4-like 469 601 - -
Ssu4g0200 753 PANTHER TWO-COMPONENT HISTIDINE KINASE 5 746 - -
Ssu4g0200 753 PIRSF Ethylen_sen_hybr_HK 1 753 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Ssu4g0200 753 Pfam His Kinase A (phospho-acceptor) domain 364 428 IPR003661 GO:0000155|GO:0007165
Ssu4g0200 753 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 432 587 IPR036890 -
Ssu4g0200 753 SUPERFAMILY CheY-like 623 748 IPR011006 -
Ssu4g0200 753 Gene3D - 155 328 IPR029016 -
Ssu4g0200 753 CDD HisKA 362 423 IPR003661 GO:0000155|GO:0007165
Ssu4g0200 753 PANTHER ETHYLENE RECEPTOR 5 746 - -
Ssu4g0200 753 Gene3D - 329 426 - -
Ssu4g0200 753 ProSiteProfiles Histidine kinase domain profile. 370 607 IPR005467 -
Ssu4g0200 753 CDD REC_ETR-like 627 742 - -
Ssu4g0200 753 Pfam Response regulator receiver domain 629 739 IPR001789 GO:0000160
Ssu4g0200 753 ProSiteProfiles Response regulatory domain profile. 628 746 IPR001789 GO:0000160
Ssu4g0200 753 SUPERFAMILY GAF domain-like 180 330 - -
Ssu4g0200 753 Pfam GAF domain 179 327 IPR003018 GO:0005515
Ssu4g0200 753 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 348 428 IPR036097 GO:0000155|GO:0007165
Ssu4g0200 753 SMART REC_2 627 742 IPR001789 GO:0000160
Ssu4g0200 753 SMART gaf_1 177 337 IPR003018 GO:0005515
Ssu4g0200 753 SMART HisKA_10 363 428 IPR003661 GO:0000155|GO:0007165
Ssu4g0200 753 Gene3D - 427 608 IPR036890 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0200 Ssu-Chr4 3332228 3335823 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0200 17 751 Miscellaneous Gene Families AT3G04580 61.446 0.0 901
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Ssu4g0200 GAF 7.7e-13 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0200 K14509 - gmx:100805023 1357.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0200 4 3332228 3335823 Ssu7g1554 7 32670622 32673773 ECH
Ssu4g0200 4 3332228 3335823 Ssu4g0200 4 3332228 3335823 ECH