Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0199 ATGGAACCTAATGACAACCAACTCAGCTCCTtcttccaccaccaccaccagcaGCAGCACCACCAGCAGCACCACCCGCCGCAGAGCGCCGCGGCCACGGCGGCGCCGACGAACGGCCTCTTGCCGAACGCGGATGGGTCCCACATACTGTACCCTCACTCGGTGGCGTCCGCCGTGTCGTCGCAGCTGGAGCCGGCGAAGAGGAAGCGGGGCCGGCCGAGGAAGTACGGCACGCCGGAGCAGGCTCTGGCCGCGAAGAAAGCCGCTACGACGTCGTCTCAGTCGTTCTCTGCGGACAAGAAGCCCCACTCCCCAGCCTTCGCTTCCTCTTCTTTCACTTCCAAGAAATCTCATTCCTTCGCTCTAGGCAATGCAGGGCAAGGGTTCACTCCGCATGTTATTTCTGTTGCTGCTGGTGAGGATGTTGGTcagaaaattatgttatttatgcaACAAAGTAGGCGTGAGATGTGTATTCTCTCTGCATCTGGTTCCATCTCTAATGCCTCTCTTCGCCAGCCAGCAACCTCAGGAGGCAACATTACGTATGAGGGTCGGTTTGAGATTATTTCACTTACTGGTTCTTATGTCCGTAATGAACTTGGAGGTCGATCTGGTGGTCTCAGTGTATGCCTATCTAATACTGATGGACAAATCATAGGTGGTGGAGTTGGTGGGCCCCTTAAAGCAGCAGGTCCGGTTCAGGTCATCGTTGGAACATTTTTTCTTGACAACAAGAAGGACACCGGTGCTGGTGTAAAAGGTGATGCCTCTGCCAGCAAGTTGCCATCACCGATTAGTGAACCAGTATCAAGTTTAGGTTTCCACCAAACAGCTGACTCTTCCAGTGGAAATCCAATCCGTGGAAATGATGAGCATCAAGCTATGGGGGGAAGTCATTTCATGATTCAACAGCTTGGTTTGCATGGGACCCCTCCCCGGTCCACAGACTGGGGTCGTCCAGATTCAAGAAATACCGGTTTTGAGCTGACAGGAAGGACAGGTCATGGGGCGCACCAGTCTCCTGAGAATGGGGGCTATGAGCAAATTCCCGATTGA 1059 0.5184 MEPNDNQLSSFFHHHHQQQHHQQHHPPQSAAATAAPTNGLLPNADGSHILYPHSVASAVSSQLEPAKRKRGRPRKYGTPEQALAAKKAATTSSQSFSADKKPHSPAFASSSFTSKKSHSFALGNAGQGFTPHVISVAAGEDVGQKIMLFMQQSRREMCILSASGSISNASLRQPATSGGNITYEGRFEIISLTGSYVRNELGGRSGGLSVCLSNTDGQIIGGGVGGPLKAAGPVQVIVGTFFLDNKKDTGAGVKGDASASKLPSPISEPVSSLGFHQTADSSSGNPIRGNDEHQAMGGSHFMIQQLGLHGTPPRSTDWGRPDSRNTGFELTGRTGHGAHQSPENGGYEQIPD 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0199 352 MobiDBLite consensus disorder prediction 306 352 - -
Ssu4g0199 352 CDD DUF296 130 241 IPR005175 -
Ssu4g0199 352 MobiDBLite consensus disorder prediction 1 110 - -
Ssu4g0199 352 MobiDBLite consensus disorder prediction 264 289 - -
Ssu4g0199 352 MobiDBLite consensus disorder prediction 85 110 - -
Ssu4g0199 352 ProSiteProfiles PPC domain profile profile. 125 266 IPR005175 -
Ssu4g0199 352 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 344 IPR039605 GO:0003680
Ssu4g0199 352 MobiDBLite consensus disorder prediction 249 294 - -
Ssu4g0199 352 Gene3D - 131 254 - -
Ssu4g0199 352 Pfam Plants and Prokaryotes Conserved (PCC) domain 131 241 IPR005175 -
Ssu4g0199 352 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 14 1 344 - -
Ssu4g0199 352 SUPERFAMILY AF0104/ALDC/Ptd012-like 127 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0199 Ssu-Chr4 3318945 3324955 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0199 45 352 AT-hook Motif Nuclear Localized (AHL) Family AT3G04590 53.433 1.02e-91 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0199 - - gmx:100816781 561.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0199 4 3318945 3324955 Ssu4g0199 4 3318945 3324955 ECH