Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0196 ATGTTCAAGCTATCTCGCGTCCTGCCTCTCACTTCCACTTCCAGGCATAAGCTGTTGGAAGTGCTGTCGTCTAGGAAAGTTGGAGTTGGAGACTGTCTGTGGGATCGGCGTTCGGCTCGCATATCTACTGCTACAAATAGCTACGCTGCTAAAGGATATGCTTCCGATCGTATATTTGCTCCTTATACTGTTTACAAGGGCAAAGCTGCATTCTCGTTGAGTCCTTGTCTTCCGACTTTCACTAAGTTGGAATCGGGGACTGTCGTAGTTGATCGACGTGGTTCAATGATGATGATTTTCATGCATTCTGTTGGAGAGCGCAAATATGACTGGGAGAAGAGAcagAGATTTGCTCTCTCAGCAACTGAAGTTGGTTCTTTGATAACCATGGGCCCCCAAGATTCCTGTGAATTCTTTCATGACCCCTCAATGTTATCAAGTAATGCTGGTCAAGTAAGGAAGAGCTTATCAATTAAGCCTCATACAAACAGCAATGGCTACTTTGTATCTTTGACTGTTGTCAACAACCTGTTAAACGCCAAAGACTATTTCAGTGTTCCTATCTCAACTGCTGAGTTTGCTGTAATGAAGACAGCTTGCAGTTTTGCATTGCCACACATTATGGGGTGGGACCAGATAACTAATCAGCAATCCAGAGGCACAGTTGGTCTTCAACCGAAGGGTGGCTCTCAAGCTTTAGACTTGGAATGGGAAAAGTGA 720 0.4444 MFKLSRVLPLTSTSRHKLLEVLSSRKVGVGDCLWDRRSARISTATNSYAAKGYASDRIFAPYTVYKGKAAFSLSPCLPTFTKLESGTVVVDRRGSMMMIFMHSVGERKYDWEKRQRFALSATEVGSLITMGPQDSCEFFHDPSMLSSNAGQVRKSLSIKPHTNSNGYFVSLTVVNNLLNAKDYFSVPISTAEFAVMKTACSFALPHIMGWDQITNQQSRGTVGLQPKGGSQALDLEWEK 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0196 239 Pfam Whirly transcription factor 64 198 IPR013742 GO:0003697|GO:0006355|GO:0006952
Ssu4g0196 239 Gene3D Transcriptional Coactivator Pc4; Chain A 48 220 IPR009044 GO:0003677|GO:0006355
Ssu4g0196 239 SUPERFAMILY ssDNA-binding transcriptional regulator domain 55 217 IPR009044 GO:0003677|GO:0006355
Ssu4g0196 239 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 1 239 - -
Ssu4g0196 239 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 1 239 IPR013742 GO:0003697|GO:0006355|GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0196 Ssu-Chr4 3287802 3291248 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0196 42 239 Whirly Transcription Factor Family AT1G71260 58.621 7.84e-86 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Ssu4g0196 Whirly 7.7e-54 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0196 - - var:108343725 417.542