Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0193 ATGGAATCCAAGAAGCAGTGGAGCGGAGGAGCCAGTTTATCCATCTCAGCGAGCTCGAAAATTATTGACAAATCAATGGTTAATTATATGACTGACAAAGAGACAAAAATTTCAGCACTGATTGTCGATGATGATGCTATCATTCGCAAAATCCACAAGACCATGCTCGAGCGCTTATTTAACATTGAGGCAGAAATGGTTAAGGATGGAAAGGAAGCGGTGGATCTGTATCGTTCTGGGGcaaattttgacataattttCATGGACAAAGAAATGCCTATCATGGATGGTCCTGagGCGACAAAACAGCTGCGTGCCATGGGTGTGAAGAGCATGATTGTGGGAATCACTACCCGTGCTGCTGGCAAAGATAGAGAGGAATTTCTAGCTGCTGGATCGAACCGTTGCTTCGAGAAGCCTCTTGACCGTGCAAAGGTTGAAGTTGTCTTGCAAGAGCATGAAAATTTTAGCATATGA 477 0.4277 MESKKQWSGGASLSISASSKIIDKSMVNYMTDKETKISALIVDDDAIIRKIHKTMLERLFNIEAEMVKDGKEAVDLYRSGANFDIIFMDKEMPIMDGPEATKQLRAMGVKSMIVGITTRAAGKDREEFLAAGSNRCFEKPLDRAKVEVVLQEHENFSI 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0193 158 Gene3D - 19 156 - -
Ssu4g0193 158 Pfam Response regulator receiver domain 40 146 IPR001789 GO:0000160
Ssu4g0193 158 PANTHER TWO-COMPONENT RESPONSE REGULATOR 24 29 154 - -
Ssu4g0193 158 ProSiteProfiles Response regulatory domain profile. 38 154 IPR001789 GO:0000160
Ssu4g0193 158 SUPERFAMILY CheY-like 36 153 IPR011006 -
Ssu4g0193 158 SMART REC_2 37 150 IPR001789 GO:0000160
Ssu4g0193 158 PANTHER TWO-COMPONENT RESPONSE REGULATOR 29 154 - -
Ssu4g0193 158 CDD REC_hyHK_CKI1_RcsC-like 40 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0193 Ssu-Chr4 3113932 3114525 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0193 37 146 Response Regulator Gene Family AT3G04280 49.107 1.07e-29 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Ssu4g0193 Response_reg 7.1e-20 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0193 - - gmx:102665311 233.802