Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0191 ATGGCGAAGAGGGAGCGAGCGAGAGGAGTGTCGGCGTCGGAATTGAAGGAGAAGTTGCGCGAATTGGTGAAGGCCATCGTCGACTCCGACGACTACACGGTGCAAGCCGCCGACAAAGCCATCGCCACCCTTTCGGCTCTGAAAGATTTAAAGTGTGGAAACTCTGTGGATGACTTTCCCCTTCCTCCCGAATTTCGCTGCCCCATTTCCACCCAATTGATGACCGATCCCGTCATCTTATCCACCGGCCAGACTTATGATAGGCCATTCATTGAGAGGTGGTTGAATGAGGGTCACAGAACGTGCCCTCAGACCCAGCAGGTTCTCTCTCACTCGATTCTAACTCCTAATTACTTGGTACGAGACATGATTGTGCAGTGGTGTAGGGACCGTGGGATTGAGCTACCTAAGCCTGCTAACGACATCGATGAAGTGGTCACCAATGCAGACAGGAACCATTTGAATTCGTTGCTTCGCAAGTTGTCCTTGTCCGTTTCTGATCAGAAAGAAGCTGCCAAGGAGCTTCGCCTTTTGACAAAGCGAATGCCTTCCATTCGGACCCTTGTCGGGGAGTCCAGTGATGTGATTCCCCAGTTGCTGAGTCCCTTATCATCATCCCCGGCCGCGGCTTCTACTGACCCTGATCTCCATGAGGACTTGATCACCACTGTTCTGAATCTCTCAATCCACGATGATAATAAGAAGGCGTTTGCGGAGGATCCTGCTGTCATTTCTCTGCTTATTGATGCCTTGAAATGTGGAACCATTCAAACAAGGAGCAATGCTGCGGCTGCTATTTTCACCCTGTCGGCTCTTGATTCCAACAAGCACATCATTGGGAAATCTGGGGCCATCAAGCATTTGCTTGAGCTTTTGGATGAGGGACAGCCATTGGCCGTGAAAGATGCTGCTTCGGCCATATTCAACTTGTGTCTTGTGCACGAGAACAAAGGGAGGACCGTGCGAGATGGGGCAGTTCGGGTTGTTCTGAACAAGATGATGGACCACATTCTGGTTGATGAGTTGTTGGCTATACTGGCACTACTATCCAGTCATCCCAAGGCTGTTGAAGAAATGGGTGATCTAGGTGCCGTTCCTTTGTTATTGGGGATTATTAGGGAGAGCACGTCAGAGAAGAGCAAGGAAAATTGTGTTGCAATTCTGTACACAGTCTGTTTCAGTGATAGAACAAAGTTGAAGGAAattagagaagaagaaaaggtcaATGGTACACTGTCAAAGCTTGCAAAGTGTGGAACTTCAAGGGCAAAAAGGAAGGCTAGTGGTGTTCTTGAGAGGCTTAATAGATCTCACTCCTTAACCCACACTGCTTAG 1335 0.4839 MAKRERARGVSASELKEKLRELVKAIVDSDDYTVQAADKAIATLSALKDLKCGNSVDDFPLPPEFRCPISTQLMTDPVILSTGQTYDRPFIERWLNEGHRTCPQTQQVLSHSILTPNYLVRDMIVQWCRDRGIELPKPANDIDEVVTNADRNHLNSLLRKLSLSVSDQKEAAKELRLLTKRMPSIRTLVGESSDVIPQLLSPLSSSPAAASTDPDLHEDLITTVLNLSIHDDNKKAFAEDPAVISLLIDALKCGTIQTRSNAAAAIFTLSALDSNKHIIGKSGAIKHLLELLDEGQPLAVKDAASAIFNLCLVHENKGRTVRDGAVRVVLNKMMDHILVDELLAILALLSSHPKAVEEMGDLGAVPLLLGIIRESTSEKSKENCVAILYTVCFSDRTKLKEIREEEKVNGTLSKLAKCGTSRAKRKASGVLERLNRSHSLTHTA 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0191 444 SMART Ubox_2 64 127 IPR003613 GO:0004842|GO:0016567
Ssu4g0191 444 Pfam Armadillo/beta-catenin-like repeat 275 311 IPR000225 GO:0005515
Ssu4g0191 444 SMART arm_5 352 393 IPR000225 GO:0005515
Ssu4g0191 444 SMART arm_5 272 312 IPR000225 GO:0005515
Ssu4g0191 444 SMART arm_5 230 271 IPR000225 GO:0005515
Ssu4g0191 444 ProSiteProfiles U-box domain profile. 60 134 IPR003613 GO:0004842|GO:0016567
Ssu4g0191 444 CDD RING-Ubox_PUB 65 107 IPR045210 -
Ssu4g0191 444 SUPERFAMILY ARM repeat 146 434 IPR016024 -
Ssu4g0191 444 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 9 10 442 - -
Ssu4g0191 444 Gene3D - 340 442 IPR011989 -
Ssu4g0191 444 SUPERFAMILY RING/U-box 55 138 - -
Ssu4g0191 444 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 134 IPR013083 -
Ssu4g0191 444 Gene3D - 190 339 IPR011989 -
Ssu4g0191 444 Pfam U-box domain 62 130 IPR003613 GO:0004842|GO:0016567
Ssu4g0191 444 PANTHER U BOX DOMAIN-CONTAINING 10 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0191 Ssu-Chr4 3031931 3033434 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0191 123 444 U-box Gene Family AT3G07360 58.308 2.56e-123 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0191 - - gmx:100776534 750.74