Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0189 ATGTCTGAAGTGAGTGCAACCCCCGAAATCCCTCAAAACAACACCATCTACATCAACAACATTAACGAGAAGATTAAGATTGATGAGTTGAAGAAGTCTCTTTACGCTGTTTTCACTCAGTTTGGGAAGATACTTGAGGTGTTAGCTTTTAAAACCCTCAAGCACAAAGGTCAAGCTTGGGTGGTCTTTGAGGATGTCTCTTCTGCTTCCAATGCCCTAAGGCAAATGCAAGGTTTCCCCTTCTATGATAAGCCCATGAGAATCCAGTATGCAAAGACCAAATCTGATATAATAGCAAAAGCGGATGGTACTTTTGCTCCTAGGGAAAAACGTAAGAGGCATGATGACAAAGGCAAAAAACGGAAGGACCAACATGATGCTAATTTAGCTGGAATGGGCCTAAATCCAGCTTATTCTGGTGCTTATGGTGCAACACCTGCTATACCTTATCCAGGTGGTGCAAAATCTATGGTACCTGAGGCTCCTGCACCACCAAATAATATTCTCTTTATTCAGAATCTTCCCAATGAGTCAACTCCCATGATGCTGCAAATGCTCTTTCTCCAGTATCCTGGATTCAAGGAAGTTAGAATGGTTGAAACAAAGCCAGGAATTGCCTTTGTGGAATATGGAGATGAAATGCAATCCACAGTGGCTATGCAGGCGCTGCAAGGTTTCAAGATAACCCCACAAAACCCTATGTTGATAACTTACGCCAAGAAATAG 726 0.4242 MSEVSATPEIPQNNTIYINNINEKIKIDELKKSLYAVFTQFGKILEVLAFKTLKHKGQAWVVFEDVSSASNALRQMQGFPFYDKPMRIQYAKTKSDIIAKADGTFAPREKRKRHDDKGKKRKDQHDANLAGMGLNPAYSGAYGATPAIPYPGGAKSMVPEAPAPPNNILFIQNLPNESTPMMLQMLFLQYPGFKEVRMVETKPGIAFVEYGDEMQSTVAMQALQGFKITPQNPMLITYAKK 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0189 241 CDD RRM2_U1A_like 165 237 - -
Ssu4g0189 241 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 6 241 - -
Ssu4g0189 241 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A 6 241 - -
Ssu4g0189 241 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 14 93 IPR000504 GO:0003723
Ssu4g0189 241 CDD RRM1_U1A_like 23 92 - -
Ssu4g0189 241 SUPERFAMILY RNA-binding domain, RBD 12 230 IPR035979 GO:0003676
Ssu4g0189 241 MobiDBLite consensus disorder prediction 101 129 - -
Ssu4g0189 241 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 169 228 IPR000504 GO:0003723
Ssu4g0189 241 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 16 86 IPR000504 GO:0003723
Ssu4g0189 241 Gene3D - 155 241 IPR012677 -
Ssu4g0189 241 Gene3D - 7 113 IPR012677 -
Ssu4g0189 241 SMART rrm1_1 168 237 IPR000504 GO:0003723
Ssu4g0189 241 SMART rrm1_1 15 89 IPR000504 GO:0003723
Ssu4g0189 241 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 167 241 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0189 Ssu-Chr4 2997483 3001246 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0189 16 139 Eukaryotic Initiation Factors Gene Family AT4G34110 28.346 4.05e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0189 K11091 - gmx:100500002 425.246