Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0184 ATGCCTTGCGGCGTGGATGAGGCCCAAGTGCAGGAGTATTATTGTGTTATATGTTCGCTGAATTTCAATACGTCTCAATATGTGGCATTTGGTGAGTGCGGCGGTGTGCAAGAGAACATAAACAACTGGGGTAGGGATGGGTTCCCAACCACTTTGTGCTGTCGAAATGCTCTCACGGTTTTGTCGGATGCGTTGGCCTCGCAAGCCCTGAACTCAACAGGACAAGTGTTCACTTCCCAAAATCAATGGCAGAGTTGTACCCAGATATTTCACCCGCAGCAAGGGATGTCACTTTATTCTTGTGGCTTTGACAACTTGTACCAAGGCAGTGCCAGATGCTCCAACTTCGTTTTGCAGGATGTTAGGGCCATGCAACAGTACCAAGATGCATTTGACAAGTGCTCCCACTTCGACCATCCATTTGATCAGTCTTGTGCAGATTGCACCGCTGCAATATTTAGCCTCAGAGATGCTTTATATGCTCAAGTGGCCAGTGAGAACGACGACACCGAGAGAGCCATATGCGGGGTAGCAGCTATTGTTGCTGTTGCAACTAACGATCCTTCCCTCGTTGACAAATTCTTACGCTGCTTGCCGGCTTCAGGAACAAGCAAGAGATCTTTGGCAACACCCTTTTGGATTGTGGCAGTGGTTGTCCTTGCAATATTGCTTGTCGTTATTATGGTCAAATGTTTGTCCAAGAAGAAGGCTCGTAGGCCGGTTTACTTGAAAGAGATCACTGCATGGTCTGGATTGTACTGGTTCTCCAAGGCTGAAATTGAGAATGCCATGAATTATGGCGGTGAAAAGATAAGCCTTGGACGTGGGAGTGCAGGGCAGGTGTATAGAGGCGTTCTACCCAGTGGTCAAGTCGTGGCCATCAAGCATTTAACAAAGAGTAACACCTCTGAGTCTTTCACTCGAGAAGTCGAAGGCCTTTCAAGGCTTCGTCATCCAAACCTGGTTTGCCTCTTTGGAAGTTGCATAGAAGGAGATGAGAGATATTTAGTCTATGAATTTTGTGCAAATGGGAATCTAGCTCAACATCTCTTAAGAAGAGATAGCCACTTGACATGGGAAACAAGAGTCAGAATTTTGAGAGATTGTTCATTTGCACTCAAGTACCTCCACCATCATATAGAGGGTTGTGTTGTCCATCGAGATATAAAGcttaCAAACATTCTTTTGACTGAGAAATACCAAGCCAAACTGTCGGATTTTGGACTGGCAAAGGTGATGGGGATTAAAGAGAGCCAGGTTTTTACTGCTGTTAGAGGAACCATAGGCTACATGGATCCAGAGTACATGAGTAATGCCAAGCTAACCTGCGCCAGTGATGTATACAGTTTTGGAATTGTTGCTCTCCAAATTCTGTCAGGACAGAAAGTCATAGAGTTGGATCTTGATGCCAGAGATCAGCTCACTAGGAAGGCAAGAGATGTTAGTATTGGAAAGCGTCCACTGTCGGATTTTGAAGACCCACGGCTAAATGGAACAGTTGATAAGGCAGACTTCGAAGCCATCCTACAGATTGCAGTGTTGTGTGTTGCCAAATCAAGCAAAGGTCGCCCTACCATTGAGGTTGTTTTTGAGGAATTGGACAACGTCTGCGGGGATACGGAATCGCGAATgAAGCCAAAGCAGGATGAGAGCTCATCAAAAACATCCACCCCTAGCTCCAAATCCTCCAAACGGACTCCTCTTTGA 1707 0.4587 MPCGVDEAQVQEYYCVICSLNFNTSQYVAFGECGGVQENINNWGRDGFPTTLCCRNALTVLSDALASQALNSTGQVFTSQNQWQSCTQIFHPQQGMSLYSCGFDNLYQGSARCSNFVLQDVRAMQQYQDAFDKCSHFDHPFDQSCADCTAAIFSLRDALYAQVASENDDTERAICGVAAIVAVATNDPSLVDKFLRCLPASGTSKRSLATPFWIVAVVVLAILLVVIMVKCLSKKKARRPVYLKEITAWSGLYWFSKAEIENAMNYGGEKISLGRGSAGQVYRGVLPSGQVVAIKHLTKSNTSESFTREVEGLSRLRHPNLVCLFGSCIEGDERYLVYEFCANGNLAQHLLRRDSHLTWETRVRILRDCSFALKYLHHHIEGCVVHRDIKLTNILLTEKYQAKLSDFGLAKVMGIKESQVFTAVRGTIGYMDPEYMSNAKLTCASDVYSFGIVALQILSGQKVIELDLDARDQLTRKARDVSIGKRPLSDFEDPRLNGTVDKADFEAILQIAVLCVAKSSKGRPTIEVVFEELDNVCGDTESRMKPKQDESSSKTSTPSSKSSKRTPL 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0184 568 Pfam SPARK 18 167 IPR043891 -
Ssu4g0184 568 MobiDBLite consensus disorder prediction 551 568 - -
Ssu4g0184 568 SMART serkin_6 267 536 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g0184 568 MobiDBLite consensus disorder prediction 539 568 - -
Ssu4g0184 568 SUPERFAMILY Protein kinase-like (PK-like) 250 532 IPR011009 -
Ssu4g0184 568 ProSitePatterns Serine/Threonine protein kinases active-site signature. 384 396 IPR008271 GO:0004672|GO:0006468
Ssu4g0184 568 PANTHER OS01G0253100 PROTEIN 28 547 IPR045271 GO:0004714|GO:0006468
Ssu4g0184 568 Gene3D Transferase(Phosphotransferase) domain 1 341 562 - -
Ssu4g0184 568 Pfam Protein kinase domain 272 529 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g0184 568 ProSiteProfiles Protein kinase domain profile. 267 536 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g0184 568 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 40 28 547 - -
Ssu4g0184 568 Gene3D Phosphorylase Kinase; domain 1 240 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0184 Ssu-Chr4 2966736 2972523 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0184 273 556 Receptor kinase-like Gene Family AT1G51800 41.695 4.57e-56 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-2 Ssu4g0184 Pkinase 1.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0184 - - gmx:100790391 884.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0184 4 2966736 2972523 Ssu4g2838 4 72444489 72447375 PCT