Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0183 ATGAATTGTTTTCCGTGTTTTTCAAAGAGTAAGAGAAGCAATAGCAAGAGGGAACATCAAGGGCCTTCACCACAGGAAAACGTTATAACAAGAACGCCGCCGGATGTAAAGAAACAAAAGCCAGATGATCCAAACCATGTTGACACTTCGAATATTCAAGCACAAAATTTCACATTCCGTGAGCTGGCAATTGCAACGAAGAATTTCCGCCAAGAATGCTTGATGGGTGAAGGGGGCTTTGGCAGAGTTTATAAGGGAACAATTCCTGCAACCGGGCAGGTGGTAGCAGTGAAGCAACTCGACCGAAATGGGGTACAAGGCAGTAAGGAATTTCTGGTTGAGATTTTGATGTTAAGTCTCTTGAACCATGACAATCTGGTCAAACTCACTGGTTATTGTGCTGATGGAGATCAACGTCTTTTGGTGTATGAGTTCATGCCAGGGGGCTCTTTAGAAGGCCGTCTTCTTGAGAGAAAACCAGATGAACCTCCATTAGATTGGTACAGCAGAATGAAAATAGCATCACATGCCGCGAAAGGACTGTGGTACTTGCACGACAAGGCCAATCCTTCAGTTATATACCGTGACTTGAAATCCTCGAACATCTTGCTGGATAATGATCACAATGCAAAACTATCTGATTGTGGACTGGCCAAACTTGCTGGTAAAGATAAGATGAACATTGTACCCACAAGAGTTATGGGCACCTATGGTTACAGTGCTCCGGAGTACGTCAGAACAGGTAACCTCACCTTGAAATCAGATGTGTACAGTTTTGGAGTTGTCTTGCTAGAGCTCATAACTGGACGGCGTGCCATTGACACCACAAGACCGCACGATGAGCAAAATCTAGTTTCATGGGCACAACCCATATTCAGGGACCCAAAAAGATATCCAGATATGGCAGATCCAAAGCTGAATAAGAATTTCCCAGAAAAGGATCTCAACCAAGTTGTTGCAATTGCAGCCATGTGCTTACAGGAGGAAGCAGCAGCCCGTCCTTTGATGAGTGATGTTGTAACTGCTCTCAGTTTTCTTTCCACCACTCCTCCACAGGTTGTTCCTGCCAAGAGTGCTGCCGCTGAAAGTGCAGCAGGATCTGATAATGACAGCCACAGCTCCGATGAAGAGAGTTCTTGCCATGAGGACAGTGGAACTGCTCAAAATCAGGTTAGTGCAAAATACCAAGAAAGTGAAGACGCCTCAGAAACCGAGTATGATTATTATGAGAATGAAAACCAACATAATTACAGTCCACAAGACATTAAAGAGACCAAGGAGTTCTATTCTAAATCAAGCCGCAAGAGCAGCACCCGATCAAAGAGTGGAACTGCTTCTTCTGGCTGCAGAAGCAGTTCTACTTCAGATTCAGAAAATGGAAGCGTCTCAACCAGCCACAAAAGCAGTAGGAAAAGCAGCAAAAAGAGCAGCAAGAAATCTTCCTTAAGCCAGAAGAGCAGCAAGAAATCCTCTTCGAGCCAAAAGTGCAACAAGAAATCTTCTGTGAGAGTCAAGAGCCACAAGAAAAGCGCGGGCATGGGGTCCGAGGATGGAAGCCATTCATCCCATAGCAGCAGTGAAGACGATGGTGGTGATCTTTTCGAGCGTAGTGGAAGCAGGCCATCCCAAGGGAATTTTTCAATTGGCCTAATCAGCAGTGAGAGTGTTCACTCAGACAATGACAGCAGCTTAAGGTCCGAGGAAAGGAGCAGCATGCATTTAGGTCATATCAGCAGCAGGGGATCAGAGGAGGGGAGTGTTCATTCACAGTAG 1773 0.4546 MNCFPCFSKSKRSNSKREHQGPSPQENVITRTPPDVKKQKPDDPNHVDTSNIQAQNFTFRELAIATKNFRQECLMGEGGFGRVYKGTIPATGQVVAVKQLDRNGVQGSKEFLVEILMLSLLNHDNLVKLTGYCADGDQRLLVYEFMPGGSLEGRLLERKPDEPPLDWYSRMKIASHAAKGLWYLHDKANPSVIYRDLKSSNILLDNDHNAKLSDCGLAKLAGKDKMNIVPTRVMGTYGYSAPEYVRTGNLTLKSDVYSFGVVLLELITGRRAIDTTRPHDEQNLVSWAQPIFRDPKRYPDMADPKLNKNFPEKDLNQVVAIAAMCLQEEAAARPLMSDVVTALSFLSTTPPQVVPAKSAAAESAAGSDNDSHSSDEESSCHEDSGTAQNQVSAKYQESEDASETEYDYYENENQHNYSPQDIKETKEFYSKSSRKSSTRSKSGTASSGCRSSSTSDSENGSVSTSHKSSRKSSKKSSKKSSLSQKSSKKSSSSQKCNKKSSVRVKSHKKSAGMGSEDGSHSSHSSSEDDGGDLFERSGSRPSQGNFSIGLISSESVHSDNDSSLRSEERSSMHLGHISSRGSEEGSVHSQ 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0183 590 MobiDBLite consensus disorder prediction 435 467 - -
Ssu4g0183 590 Pfam Protein kinase domain 71 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g0183 590 ProSitePatterns Serine/Threonine protein kinases active-site signature. 192 204 IPR008271 GO:0004672|GO:0006468
Ssu4g0183 590 CDD STKc_IRAK 75 343 - -
Ssu4g0183 590 MobiDBLite consensus disorder prediction 560 574 - -
Ssu4g0183 590 MobiDBLite consensus disorder prediction 468 482 - -
Ssu4g0183 590 PANTHER OS07G0668900 PROTEIN 1 561 - -
Ssu4g0183 590 PANTHER RECEPTOR KINASE-LIKE PROTEIN 1 561 - -
Ssu4g0183 590 ProSiteProfiles Protein kinase domain profile. 69 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g0183 590 MobiDBLite consensus disorder prediction 383 397 - -
Ssu4g0183 590 Gene3D Phosphorylase Kinase; domain 1 33 145 - -
Ssu4g0183 590 SMART serkin_6 69 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g0183 590 SUPERFAMILY Protein kinase-like (PK-like) 55 356 IPR011009 -
Ssu4g0183 590 MobiDBLite consensus disorder prediction 1 51 - -
Ssu4g0183 590 MobiDBLite consensus disorder prediction 417 434 - -
Ssu4g0183 590 Gene3D Transferase(Phosphotransferase) domain 1 146 359 - -
Ssu4g0183 590 MobiDBLite consensus disorder prediction 538 559 - -
Ssu4g0183 590 MobiDBLite consensus disorder prediction 356 590 - -
Ssu4g0183 590 MobiDBLite consensus disorder prediction 521 535 - -
Ssu4g0183 590 MobiDBLite consensus disorder prediction 483 499 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0183 Ssu-Chr4 2958313 2961181 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0183 1 350 Glycoside Hydrolase AT3G07070 64.365 7.66e-167 479
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Ssu4g0183 Pkinase 1.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0183 - - gmx:100790911 845.114