Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0166 atGGTTGTTCTTTGCTGCACTGTACAAGCAGATGGAGAAGGGAAAACTGACATACATGACAGTCCCATTTCCAAAGAGGCTGCAGCTTCTAATAAGATGATGGCAGTTGTCCCCGTCAGTGTTGCAGGAACAATAGTTGGACCTGTAGTTTCTTCAGGTATGACCACCGCACTGGAACTGAGAAATCCTACCATTGTTCATTCTAAAACAAATACCACAAGTGCCCCACAACCTTGTTCAGTATTGCCTGCAGAAGCTTGGTTACAGAATGAGCGTGAGCTGAAACGTGAGAGACGGAAACAATCGAATCGAGAATCTGCTAGAAGGTCCAGACTAAGGAAGCAGGCTGAATCCGAAGAACTGGCACAAAAAGTTGAATCCTTGAATGCTGAGAATGTGACACTGAAATCAGAAATAAATCGACTGACTGAAAGTTCTGAAAAACTGAGGGTGGAAAATGCTACATTGAGGgaaaaacttaaaaatgctCAACTGGGACGGGCACAAGAGATAGCTTTGAACATAATTGACAGCCAGAGGGCTCCACCTGTAAGTACAGAAAACTTACTATCAAGAGTTAATAATAATTCCGGTTCTAATGATAGAACTGCGGAGGATGAGAAtggtttttgtgaaaataaaccAAACTCTGGTGCAAAGCTGCATCAACTGCTGGACACAAGTCCTAGAGCTGATGCTGTGGCAGCTGGTTGA 714 0.4188 MVVLCCTVQADGEGKTDIHDSPISKEAAASNKMMAVVPVSVAGTIVGPVVSSGMTTALELRNPTIVHSKTNTTSAPQPCSVLPAEAWLQNERELKRERRKQSNRESARRSRLRKQAESEELAQKVESLNAENVTLKSEINRLTESSEKLRVENATLREKLKNAQLGRAQEIALNIIDSQRAPPVSTENLLSRVNNNSGSNDRTAEDENGFCENKPNSGAKLHQLLDTSPRADAVAAG 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0166 237 PANTHER G-BOX-BINDING FACTOR 3 8 237 - -
Ssu4g0166 237 CDD bZIP_plant_GBF1 96 144 IPR045314 GO:0003700|GO:0006355
Ssu4g0166 237 Coils Coil 111 166 - -
Ssu4g0166 237 MobiDBLite consensus disorder prediction 93 120 - -
Ssu4g0166 237 Coils Coil 84 104 - -
Ssu4g0166 237 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 93 156 IPR004827 GO:0003700|GO:0006355
Ssu4g0166 237 PANTHER G-BOX-BINDING FACTOR 3-RELATED 8 237 IPR044827 GO:0003700|GO:0006355|GO:0043565
Ssu4g0166 237 MobiDBLite consensus disorder prediction 185 237 - -
Ssu4g0166 237 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 98 113 IPR004827 GO:0003700|GO:0006355
Ssu4g0166 237 SUPERFAMILY Leucine zipper domain 94 150 IPR046347 GO:0003700|GO:0006355
Ssu4g0166 237 Gene3D - 94 148 - -
Ssu4g0166 237 Pfam bZIP transcription factor 91 153 IPR004827 GO:0003700|GO:0006355
Ssu4g0166 237 MobiDBLite consensus disorder prediction 185 204 - -
Ssu4g0166 237 SMART brlzneu 91 155 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0166 Ssu-Chr4 2776545 2777703 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0166 90 237 bZIP Transcription Factor Family AT2G46270 58.108 1.21e-40 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Ssu4g0166 bZIP_1 2.9e-20 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0166 K09060 - gmx:100781875 379.407