Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0160 ATGGAAGCCAGATTGAGTGAGCAGAAAGTTGTTACTTACAAGCATATCACACCTGGTATTTTGAATGCGGCACCAAAGGTAATTCGGATTTCAATGATGGATCCCTATGCCACAGacgatgaagatgaagatgaagggTTGGTTAACCATCCTAGAACGAAGAAGATTGTGAATGAGATCAGAGTTGTGGAGAAGAAGGGTTCAACTAACAGTGAGTCCCGTGTTCACGGCACTAACGTGTCAAAACAGCATTACAAGGGAAAAACTGAAGAGGGTCTACAAAAGAAGTTCAGAGGAGTTCGTCAAAGGCCATGGGGAAGATGGGCAGCAGAAATCAGAGATCCTGTGAAGCGAACAAGGGTGTGGCTAGGGACTTATGACACCGCTGAAGAAGCTGCTATGGTTTATGACAAAGCAGCTATTAGCTTTAGAGGCTTTAATGCTCTCACTAATTTCATCAAGCCTCCTACCAGGGAAGATATTGACAGGGATGTTGTTCTTTTTAATGAATCTCAAGCTAGTGTAAGTGGTTTGGTTGAAGACGTGAGTAGTGGGAATGACTCAAGTAAAGAGTCTCATTTGCCTTCACCTACTTCTGTGCTTGGACTACGGCCTGCTGAACTTACCTTGGAGGAGGTTTCTGAAACAGATTCTGTGAGAGAAGAGCCAAGTTCGCAagatagttttttgtttttagattcAACGTCCATTgattgttatttcaattttgaaactcCTTCACCAGTGTTTCTTCATGAAACTAGTGTAACACAGCCTGTTTTCCCTGACAATTTCAGTGATATTTCCCATAGAGTCAATGAGGATTTTCAATCATGCAATTGGGATATAGATAGTTACTTCAACGATCCTTTTCTGCACTGA 882 0.3946 MEARLSEQKVVTYKHITPGILNAAPKVIRISMMDPYATDDEDEDEGLVNHPRTKKIVNEIRVVEKKGSTNSESRVHGTNVSKQHYKGKTEEGLQKKFRGVRQRPWGRWAAEIRDPVKRTRVWLGTYDTAEEAAMVYDKAAISFRGFNALTNFIKPPTREDIDRDVVLFNESQASVSGLVEDVSSGNDSSKESHLPSPTSVLGLRPAELTLEEVSETDSVREEPSSQDSFLFLDSTSIDCYFNFETPSPVFLHETSVTQPVFPDNFSDISHRVNEDFQSCNWDIDSYFNDPFLH 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0160 293 MobiDBLite consensus disorder prediction 66 87 - -
Ssu4g0160 293 ProSiteProfiles AP2/ERF domain profile. 96 153 IPR001471 GO:0003700|GO:0006355
Ssu4g0160 293 SMART rav1_2 96 159 IPR001471 GO:0003700|GO:0006355
Ssu4g0160 293 MobiDBLite consensus disorder prediction 180 196 - -
Ssu4g0160 293 PRINTS Ethylene responsive element binding protein signature 119 135 IPR001471 GO:0003700|GO:0006355
Ssu4g0160 293 PRINTS Ethylene responsive element binding protein signature 97 108 IPR001471 GO:0003700|GO:0006355
Ssu4g0160 293 MobiDBLite consensus disorder prediction 180 200 - -
Ssu4g0160 293 CDD AP2 95 152 IPR001471 GO:0003700|GO:0006355
Ssu4g0160 293 Pfam AP2 domain 96 145 IPR001471 GO:0003700|GO:0006355
Ssu4g0160 293 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF5-RELATED 6 290 - -
Ssu4g0160 293 Gene3D AP2/ERF domain 95 154 IPR036955 GO:0003700|GO:0006355
Ssu4g0160 293 SUPERFAMILY DNA-binding domain 96 152 IPR016177 GO:0003677
Ssu4g0160 293 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 6 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0160 Ssu-Chr4 2702926 2703807 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0160 1 292 AP2-EREBP Transcription Factor Family AT2G46310 36.392 1.90e-42 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Ssu4g0160 AP2 3.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0160 - - ccaj:109796536 405.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0160 4 2702926 2703807 Ssu4g0160 4 2702926 2703807 ECH