Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0144 ATGGAAGAGAGCATCAAGAGGGAACACACTAGTCTGGTCCATGAACTAATCCAAGGAAAGGAGCTAGCAAAGCAGCTCAGCAACCAAATGGTTTCTTCTTCTCCATCATCCCTTGAAACCAGTGAATTGTTGCTTGAGAAAATACTTTCGTCCTATGAGAAAGCACTCACCATGCTGAACTGGGGGTCTATTGTGGGAGAGGCCAAGACCACCAGTGGCAACATGATGGATTCCCATTGTTCTTTTACAAATGGTGGGAGCCCCAGAAGTGAGGTCGTGGACCGTGAATTTGAGCACAAAGCTGTCTTCAAGAAAAGAAAGACCATGCCCAGATGGACAGAGCAAGTGAAGATTTGCTCAAGCACAGGACTTGAGGGGTCTTTGGATGATGGATATAGCTGGAGAAAATACGGGCAAAAGGATATTCTTGGAGCTAAGTTTCCAAGAGGATATTACAGATGCACACATAGAAATGTGCAAGGGTGCTTGGCAACAAAACAAGTTCAAAGGTCAGATGAAGACCCGACAACAATTGAGGTGACCTACAGAGGAAGACATACATGCACGCAGGCTAAGCATTTAAACAAGGCATACCCATCAAACATAAAGATGGGTTTGGTGGAAAATCAATTCCACAATGATCAAAAGAATCAACCACTTCAAGAGAAAATACAACATACCCCAGAAGGGATTTTCACGTTTGAAACACAGCTTAAAGTAAAAACTGAGGAATTGGAAACCAAGGAGGATATCTTCCCATGGTTTAGCTTTCCCTCTCCATCAATTGGATCAGAAAACGAGGACAACAACATGGTACCCGAGACCATGATCGAAAACCATTTCATGGAAAGCTTTTCTCCTTTATTCATATCACCAGCGACTTCAGAATCAAACCCTTTCAGTTTGTCAGCATACCAGTGGGGCAGCACTGGACTGTTATGCCAAAACATACAAACCTCAGAATCTGATATCACTGACATAGTTTCAGCCCCAACTTCAGTCACCAACTCCCCAATCCTGGATTTGGATATCTTGCTTCAAAAAGGGGATTTTGACACGGATTTCCCTTTCAACACCCctgaatttttctcttcatAA 1098 0.4271 MEESIKREHTSLVHELIQGKELAKQLSNQMVSSSPSSLETSELLLEKILSSYEKALTMLNWGSIVGEAKTTSGNMMDSHCSFTNGGSPRSEVVDREFEHKAVFKKRKTMPRWTEQVKICSSTGLEGSLDDGYSWRKYGQKDILGAKFPRGYYRCTHRNVQGCLATKQVQRSDEDPTTIEVTYRGRHTCTQAKHLNKAYPSNIKMGLVENQFHNDQKNQPLQEKIQHTPEGIFTFETQLKVKTEELETKEDIFPWFSFPSPSIGSENEDNNMVPETMIENHFMESFSPLFISPATSESNPFSLSAYQWGSTGLLCQNIQTSESDITDIVSAPTSVTNSPILDLDILLQKGDFDTDFPFNTPEFFSS 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0144 365 SUPERFAMILY WRKY DNA-binding domain 127 190 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu4g0144 365 SMART WRKY_cls 128 190 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu4g0144 365 PANTHER WRKY TRANSCRIPTION FACTOR 41-RELATED 1 358 - -
Ssu4g0144 365 Gene3D WRKY domain 115 191 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu4g0144 365 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 1 358 IPR044810 GO:0003700
Ssu4g0144 365 Pfam WRKY DNA -binding domain 129 188 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu4g0144 365 ProSiteProfiles WRKY domain profile. 123 186 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0144 Ssu-Chr4 2422086 2424132 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0144 3 199 WRKY Transcription Factor Family AT5G24110 47.475 8.58e-52 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu4g0144 WRKY 5.5e-27 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0144 - - gmx:100790050 612.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0144 4 2422086 2424132 Ssu2g2936 2 90739366 90740947 ECH
Ssu4g0144 4 2422086 2424132 Ssu4g0144 4 2422086 2424132 ECH
Ssu4g2921 4 74551597 74553684 Ssu4g0144 4 2422086 2424132 ECH
Ssu2g2936 2 90739366 90740947 Ssu4g0144 4 2422086 2424132 ECH
Ssu4g0144 4 2422086 2424132 Ssu4g2921 4 74551597 74553684 PCT