Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0133 ATGAGAGTGAAGAGACAGGACGCAGAACAGTGGATGTCCCACCGTATGCTACCTGAGAACTTGAAGGAAAGAATTAGACGGTATGAACAGTACCAATGGCAAGAAAACAGGGGTGTTCAGGAGGAGGCATTAATTCGTAACCTTCCTAAAGATCTCAGAAGGGACATAAAGCGTCACCTTTGCTTAGCTTTAGTTAAAAGAGTACCAATGTTTGAGAAAATGGATGAGCAGTTGTTGGATGCAATGTGCGATAGACTGAAGCCAGTCCTTTATACCGAGAACAGCTACATTGTTCGTGAAGGAGATCCAGTTGATGAGATGCTTTTCATTATGCGAGGAAAAGTTTCTACTATGACAACAAATGGTGGAAGAACTGGTTTCTTCAACTCCTTGCTCCTCAAGGATGGTGACTTCTGTGGAGAGGAGCTTCTGACATGGGCCTTGGATGCCAACTCCTCAATTCATCTACCTATTTCAACTAGGACAGTACAAACCATAACAGAAGTTGAAGTCTTTGCTCTCATGGCTGATGACTTGAAGTTTGTTGCTTCCCATTATCGACGTTTTCACGGCCAAAAACTCCAACATATTTTCAGGCAAGGCTTGATGATTGATATGTTCTATTCCTCACGGTGGAGGACATGGGCTGCCACTTACATACAAGTGGCTTGGCATCGATACTGTAAGAAGAAGATGGAGAGGTCATTGCGCGAAGCAGAAGACAAGCTACAAGATGCTTTGGCAAATGAGGATGGGTCTAGTCCGAACCTTGGTGCAACCATATATGCATCAAGGTTTACTGCCAATAGAATGCAACAGAGACTGCTACACCTCTTACCTCCAAAGCCAGCTGAGCCAGATTTCTCTGCTCAGAAACACTAA 882 0.441 MRVKRQDAEQWMSHRMLPENLKERIRRYEQYQWQENRGVQEEALIRNLPKDLRRDIKRHLCLALVKRVPMFEKMDEQLLDAMCDRLKPVLYTENSYIVREGDPVDEMLFIMRGKVSTMTTNGGRTGFFNSLLLKDGDFCGEELLTWALDANSSIHLPISTRTVQTITEVEVFALMADDLKFVASHYRRFHGQKLQHIFRQGLMIDMFYSSRWRTWAATYIQVAWHRYCKKKMERSLREAEDKLQDALANEDGSSPNLGATIYASRFTANRMQQRLLHLLPPKPAEPDFSAQKH 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0133 293 Pfam Cyclic nucleotide-binding domain 90 180 IPR000595 -
Ssu4g0133 293 ProSiteProfiles cAMP/cGMP binding motif profile. 70 174 IPR000595 -
Ssu4g0133 293 Gene3D Helix hairpin bin 1 61 - -
Ssu4g0133 293 CDD CAP_ED 70 189 IPR000595 -
Ssu4g0133 293 SMART cnmp_10 70 201 IPR000595 -
Ssu4g0133 293 Gene3D Jelly Rolls 68 188 IPR014710 -
Ssu4g0133 293 SUPERFAMILY cAMP-binding domain-like 2 190 IPR018490 -
Ssu4g0133 293 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 1 291 - -
Ssu4g0133 293 Coils Coil 229 249 - -
Ssu4g0133 293 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 1 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0133 Ssu-Chr4 2187948 2189300 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0133 1 289 Ion Channels AT4G01010 65.763 1.54e-142 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0133 K05391 - gmx:100797784 490.73