Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0131 ATGGAGCAGAGCAGGAGCGGCAAGATGTACAACCTGTTCGTGAAGCACTTGGACGGGAAAACCCTGACCCTGTTATTCCCGTCTCCGATCCTCTACGCGAGTTTCATCAAGGATCGCCTCTTCGAACTCACCGGAATCCCCGCGCAGCACCAGCGCCTCGTCACCGGCTGCCGCCACCTCAACGACGACAAATCGTCGATCGAATGCTCCTCGGAGGACGGCAACATGTTCCCGTCCGTGCGGCTGCTTCTGCGCCTGAAGGGCGGGAAGGGAGGCTTCGGCTCGCTGCTGCGCGGCGCCGCCACGAAGGCCGGCCAGAAGAAGACCAACAATTTCGACGCTTGCAGGGACATGAGCGGCCGGAGGCTGCGCCACGTCAACGCCGAGAAGAGGTTGGAGGAGTGGAAGGCCGGGGAAGAGGAGAGAAGGCTCGAGAAGGTGGCTGAGGAGTTTCTCAAGAAGCAGATGAAGAAGGGTAAGGGTAAGGGTAAGGGTGAAGGTGACGGCGAGGCACACAAATACGTCGCTAAATACAGGGAGGACTCTGAACGTTGTGTTGCCGAGGTTGCCTTGTCTGTTAAGGAGGCTCTCACTGCCAAGCGCAAGAGCCCTTCACAACCCCATAATGATGCCAAGAAGATGAAGATATGGATGGGGAAGAGGAAATTGAATGAGAGTGATAGTGATGATTCTGATGAGGAAGGGGAAACCGAGAAATCGGATTTGTTGAATGGCCAGAATGAGGCGGGCTCTAATAAGGCTGAGGGCAGTTTGGGTTCCGTGACCGGGGGCGGAGGCTCTTCTGGTACTGACTCGTGTGAAAGTGGGTCTGAAGAGGAGAAGGAAACTGTTGTACAAGGAAAAGTGGGATCTGTTGGGTTGCTGAGTGGCGAAAGTATTCAGGCCGGACCGACTGTTGCAGTCGAGGCTACTGCAATGCCAAAGGAGTCGGTGGTTGCTGGACTTGATGCTGAAGATAATGGATATCAGGATGGCCATGGCGGTGTGTCTGACAAGTTCGAGGGTGCTGTGAATCAGGCCTCAAATATTACGGGCTCTGAAACTGCGGCCAGTGCTGGCGAATCTGATGATATGGAAATTGATGGATCTCTTGAGCATAAAGCAGCAGTCAATGAAGAAAGTTTGCCTAGCACTAGTGTTCCTGCGTTGGAGGAGCCCCTGAATTTTGATGCCTTTAATTCAGCTGCCGAACTTGAGGTTCTTGGCTTGGAAAGGTTGAAGTCTGAACTGCAGTCACGTGGGTTAAAATGTGGAGGTACTTTGCAGGAGCGTGCTGCCaggctttttcttttaaaatcaactCCTCTGGATAAACTTCCAAAGAAGCTGCTTGCAAAGAAAAACTATGAAGTGAAATGCAGCTGTATCAGGATACAGTCTTACCCGTAG 1410 0.5241 MEQSRSGKMYNLFVKHLDGKTLTLLFPSPILYASFIKDRLFELTGIPAQHQRLVTGCRHLNDDKSSIECSSEDGNMFPSVRLLLRLKGGKGGFGSLLRGAATKAGQKKTNNFDACRDMSGRRLRHVNAEKRLEEWKAGEEERRLEKVAEEFLKKQMKKGKGKGKGEGDGEAHKYVAKYREDSERCVAEVALSVKEALTAKRKSPSQPHNDAKKMKIWMGKRKLNESDSDDSDEEGETEKSDLLNGQNEAGSNKAEGSLGSVTGGGGSSGTDSCESGSEEEKETVVQGKVGSVGLLSGESIQAGPTVAVEATAMPKESVVAGLDAEDNGYQDGHGGVSDKFEGAVNQASNITGSETAASAGESDDMEIDGSLEHKAAVNEESLPSTSVPALEEPLNFDAFNSAAELEVLGLERLKSELQSRGLKCGGTLQERAARLFLLKSTPLDKLPKKLLAKKNYEVKCSCIRIQSYP 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0131 469 Pfam Silencing defective 2 N-terminal ubiquitin domain 10 157 IPR024974 -
Ssu4g0131 469 MobiDBLite consensus disorder prediction 205 228 - -
Ssu4g0131 469 MobiDBLite consensus disorder prediction 242 273 - -
Ssu4g0131 469 Gene3D - 2 109 - -
Ssu4g0131 469 MobiDBLite consensus disorder prediction 342 358 - -
Ssu4g0131 469 ProSiteProfiles Ubiquitin domain profile. 10 75 IPR000626 GO:0005515
Ssu4g0131 469 PANTHER SPLICING FACTOR SF3A-RELATED 9 455 - -
Ssu4g0131 469 SUPERFAMILY Ubiquitin-like 6 89 IPR029071 -
Ssu4g0131 469 PANTHER REPLICATION STRESS RESPONSE REGULATOR SDE2 9 455 - -
Ssu4g0131 469 Coils Coil 400 420 - -
Ssu4g0131 469 MobiDBLite consensus disorder prediction 198 289 - -
Ssu4g0131 469 Pfam Replication stress response SDE2 C-terminal 385 453 - -
Ssu4g0131 469 MobiDBLite consensus disorder prediction 322 364 - -
Ssu4g0131 469 CDD Ubl_ubiquitin_like 12 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0131 Ssu-Chr4 2176392 2179050 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0131 380 453 C2H2 Transcription Factor Family AT5G06160 44.595 7.81e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0131 K25059 - gmx:100781694 672.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0131 4 2176392 2179050 Ssu4g0131 4 2176392 2179050 ECH