Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0130 ATGGACATCTTGAAGGTCCTCTTCCacttcttcatattttttcctGTCACGTATGCCTCAGATGATTGCCTATACTATTCTTGGTGCAGCGACAACAACGTCCTTGTTCGTTTCCCCTTTCAAATAGAAGGTGAGGAACACCCTTATTGTGGCTATCCTGTTTTCAAATTGACTTGTACCAATGATAGCAAAACAGTTATAACACTTCCTTACACGGGAGAGTTCTATGTCCGCAACATTAACTACCTCAGACAAGAGATACAAATCTATGACCCTGGTAATTGCCTTCCAAAACGCCTTCTAAGCCTCGATCTTTCAGATTCTCCCTTTGTTGCCACTTCACTCCGCAACTACACCTTCTTAAGGTGCCCAACTCGGAACGCAGGGTTACAATTCATTCCCATTGAGTGTCTTAGCAATTCTACATCTTTCGTATCAGCTATTCCTTCAGTGAACTTGACCAATTCGTTGCCCGCGTCTTGCCATGTTATAAAGAAGCTCTCGTTTCCGGTTGCAAGGCCGGGACGATATGAGGAAACTTTCAGAGATGACCTTAGTGGAGATCTTCGATTAACATGGTATGAACCTGACTGTAGATATTGCGAATCACAAGAGGCCATGTGCGGATTTGAGAGCAGAAACAGTGATCAAGTTCGTTGTTTCTTTGATTACCAAACggGTCGTCCACAATATGGTCTTCGAGTTTTTGGAATCATCACATTATCCATTGTGGGACCAGCTATCATGTGTGCCATTGGGATGGCATGCTACGCGTCCTTCAAGAACAGAGGAGGCAACACAGCCAGAATTGCTGCTGCACAGAGGTCAGCACCAACTGCAACATCACCCGAACCTGCTATAACCATTTCTAGAACTGGTCTGGATGAGTCTACAATCGAGTCTTATGAGAAACTGGTACTAGGGGAGAGCCGACGACTGCCAGGACCCAATGACGACGGGTGTTGCACCATATGCCTGTCAGAGTATAAAACCAAAGAGACAATCAGATGCATTCCTGAATGTGCACATTGCTTCCATGCCGACTGCATAGATGAATGGCTTCGCATGAACGGTACATGCCCCCTTTGCCGCAACTCTCCCTCTCCTCCTTCTACTGTTCTAGTTATGTCCAGTGACCCTTGA 1143 0.4506 MDILKVLFHFFIFFPVTYASDDCLYYSWCSDNNVLVRFPFQIEGEEHPYCGYPVFKLTCTNDSKTVITLPYTGEFYVRNINYLRQEIQIYDPGNCLPKRLLSLDLSDSPFVATSLRNYTFLRCPTRNAGLQFIPIECLSNSTSFVSAIPSVNLTNSLPASCHVIKKLSFPVARPGRYEETFRDDLSGDLRLTWYEPDCRYCESQEAMCGFESRNSDQVRCFFDYQTGRPQYGLRVFGIITLSIVGPAIMCAIGMACYASFKNRGGNTARIAAAQRSAPTATSPEPAITISRTGLDESTIESYEKLVLGESRRLPGPNDDGCCTICLSEYKTKETIRCIPECAHCFHADCIDEWLRMNGTCPLCRNSPSPPSTVLVMSSDP 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0130 380 Pfam Ring finger domain 322 364 IPR001841 -
Ssu4g0130 380 Pfam Wall-associated receptor kinase galacturonan-binding 27 91 IPR025287 GO:0030247
Ssu4g0130 380 SUPERFAMILY RING/U-box 316 368 - -
Ssu4g0130 380 CDD RING-H2_PA-TM-RING 321 364 - -
Ssu4g0130 380 Pfam Wall-associated receptor kinase C-terminal 157 222 IPR032872 -
Ssu4g0130 380 PANTHER RING-H2 FINGER PROTEIN ATL21A-RELATED 1 372 - -
Ssu4g0130 380 ProSiteProfiles Zinc finger RING-type profile. 322 364 IPR001841 -
Ssu4g0130 380 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 372 - -
Ssu4g0130 380 SMART ring_2 322 363 IPR001841 -
Ssu4g0130 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 284 369 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0130 Ssu-Chr4 2171853 2173951 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0130 29 369 C3H Transcription Factor Family AT2G25410 44.348 7.13e-92 279
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0130 - - gmx:100799895 660.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0130 4 2171853 2173951 Ssu4g0130 4 2171853 2173951 ECH
Ssu4g0130 4 2171853 2173951 Ssu4g2949 4 75435825 75439057 PCT