Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0125 ATGGAATCGAGTAGCATTGAGAGCAGCACTGTGTCATCGATGACTATGATGGAAGAGGATGAGCATCCCCATCAGTTTTCTTCAATCTCGAAGCTGCACAACAATGGTCCCACCACTACCAGTGTTCACGACCTTCTTGAATGCCCTGTCTGCACAAACTCTATGTACCCTCCTATCCATCAGTGCCACAATGGGCACACACTTTGCTCAACTTGCAAGACAAGGGTACACAACCGATGCCCAACTTGCAGGCAGGAACTTGGTGATATAAGGTGTTTGGCATTAGAGAAGATAGCAGAATCACTTGAACTGCCTTGCAGATACATCTCTCTTGGGTGTCCAGAGATATTTCCCTATTACAGCAAACTCAAACATGAGGCTATTTGTAACTTCAGACCATACAACTGCCCTTACGCAGGGTCAGACTGCTCAGTGGTTGGGGATATTCCATGCCTTGTCGCTCATTTAAGGGATGACCACAGGGTTGATATGCATTCTGGATGCACTTTTAACCATCGCTATGTCAAGTCTAATCCCCTGGAAGTAGAAAATGCTACATGGATGCTAACGGTTTTCCACTGTTTTGGTCAGTATTTTTGCCTCCATTTTGAGGCCTTCCAGCTTGGCATGGCTCCCGTTTATATGGCGTTCCTCCGATTCATGGGCGACGAAAGAGAGGCCCGGAACTACAGCTACAGCTTGGAGGTGGGTGGAAATGGACGTAAACTAACTTTTGAGGGGAGTCCAAGAAGCATTAGAGATAGCCATAAGAAAGTCAGAGACAGTCATGATGGTCTCATCATTTACCGCAACATGGCGCTTTTCTTCTCAGGTGGAGACAGGAAAGAGTTGAAGCTACGTAGTCACAGGAAGGATATGGAAAGAACAGCAAAACCCTGA 900 0.4656 MESSSIESSTVSSMTMMEEDEHPHQFSSISKLHNNGPTTTSVHDLLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKIAESLELPCRYISLGCPEIFPYYSKLKHEAICNFRPYNCPYAGSDCSVVGDIPCLVAHLRDDHRVDMHSGCTFNHRYVKSNPLEVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDEREARNYSYSLEVGGNGRKLTFEGSPRSIRDSHKKVRDSHDGLIIYRNMALFFSGGDRKELKLRSHRKDMERTAKP 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0125 299 ProSiteProfiles Zinc finger SIAH-type profile. 101 161 IPR013010 GO:0008270
Ssu4g0125 299 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 100 IPR013083 -
Ssu4g0125 299 ProSiteProfiles Zinc finger RING-type profile. 48 84 IPR001841 -
Ssu4g0125 299 MobiDBLite consensus disorder prediction 1 16 - -
Ssu4g0125 299 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 156 IPR013083 -
Ssu4g0125 299 SUPERFAMILY TRAF domain-like 101 283 - -
Ssu4g0125 299 MobiDBLite consensus disorder prediction 1 33 - -
Ssu4g0125 299 CDD RING-HC_SIAHs 46 84 - -
Ssu4g0125 299 Pfam Seven in absentia protein family 90 287 IPR018121 GO:0005737|GO:0006511|GO:0007275
Ssu4g0125 299 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 171 288 IPR008974 GO:0005515
Ssu4g0125 299 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 288 - -
Ssu4g0125 299 SUPERFAMILY RING/U-box 35 87 - -
Ssu4g0125 299 CDD Sina 162 287 - -
Ssu4g0125 299 PANTHER UBIQUITIN LIGASE SINAT3 1 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0125 Ssu-Chr4 2133089 2137800 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0125 1 287 C3H Transcription Factor Family AT2G41980 71.280 2.61e-154 432
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0125 K04506 - gmx:100792687 597.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0125 4 2133089 2137800 Ssu4g0125 4 2133089 2137800 ECH