Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0122 atgTTGTCGTTGCCGCCAACGAAGAGTCCAGAGAGACAGAGGTGGCGAAACTCAAGAGGGAAGATTCGGAACGTGTTATTTGCCAGCTGTCGAACAGGAGGAACGTGGCAGGTTAAGGCTTTCAAAGGAACAACGCTGGTCTCAATTAGGGAGTTTTACATGAAAGATGGAAAACTACTTCCTGGTTCTAAAGGGATAAGTTTATCTTCTGAACAATGGTCGACCTTCAAGACGAGTGTTCCTTCCATAGAGGAAGCTATCACAAAGATGGAAGGAAGGATAAGATCGGAGCTTAATGGCAAGCAGAATGGAGATGCGCCAAATTCAGTTGTTGATGTTGCTCCTCTTGAGCCTGTCCCTGTTGAGGTCATCCGTTTTGATGGGAAGAATTACCATTTCTGGGCTCAGCAGATGGAATTACTCTTGAAACAATTAAAGATTGAATATGTTCTTACTGAACCATGCCCGAATGCTACATTAGGGGAAGGTGTAAGTACTGAAGAACTTGCTGCAGCCAAGGCTGCAGAAAGGAGATGGCTGAATGATGATTTAATGTGTCGTCGCAATATCTTGAGCCATTTATCTGATCCTCTTTTCAACCAGAATGCCAACAGAAAAATGAGTGCTAAGGAGTTATGGGAAGAGTTAAAACTGGTTTATCTGTATGAGGAATTTGGAACCAAGAGATCTCAAGTGAAAAAGTATATTGAATTTCAGATGGTTGATGAGAAAGCAGTTGTTGAGCAAACCCGAGAATTAAATGGCATTGCAGATTCTATTGCTGCTGCTGGAATGTTTATTGATGATAACTTTCATGTTAGTGTCATCATTTCAAAGCTTCCACCATCCTGGAAGGACTTTTGCATCAAGTTAATGCGTGAGGAATATCTACCTTTCTGGAAGTTAATGGAACGTATACAGATAGAGGAAGAATCTCGCAATGGAGTGAAACGAGTGGGTGAACATTCTAACAGTATAGGATTTCACCTGGCCAATAGAGGCGGACAGAAGAGGGTTGACAATAGGCCACTGGGAATGTGTAGGAATAGGTCAGAAATTAATGCCAAGAGCGTACCCTGTAGTATATGTGGCAAGAAGGGACATCTTTCTAAAAATTGCTGGCGAAGGTATGACAAGCAAGCTAATGAGAGGACAGCAGAAGAGGATGTGCGTATACCTACAGAAGTTGATACTCTGGGTGCTACCCAGTAG 1212 0.4257 MLSLPPTKSPERQRWRNSRGKIRNVLFASCRTGGTWQVKAFKGTTLVSIREFYMKDGKLLPGSKGISLSSEQWSTFKTSVPSIEEAITKMEGRIRSELNGKQNGDAPNSVVDVAPLEPVPVEVIRFDGKNYHFWAQQMELLLKQLKIEYVLTEPCPNATLGEGVSTEELAAAKAAERRWLNDDLMCRRNILSHLSDPLFNQNANRKMSAKELWEELKLVYLYEEFGTKRSQVKKYIEFQMVDEKAVVEQTRELNGIADSIAAAGMFIDDNFHVSVIISKLPPSWKDFCIKLMREEYLPFWKLMERIQIEEESRNGVKRVGEHSNSIGFHLANRGGQKRVDNRPLGMCRNRSEINAKSVPCSICGKKGHLSKNCWRRYDKQANERTAEEDVRIPTEVDTLGATQ 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0122 403 Gene3D Transcriptional Coactivator Pc4; Chain A 35 95 IPR009044 GO:0003677|GO:0006355
Ssu4g0122 403 PANTHER PBF68 PROTEIN 25 396 - -
Ssu4g0122 403 PANTHER PBF68 PROTEIN 25 396 - -
Ssu4g0122 403 Pfam Transcriptional Coactivator p15 (PC4) 38 78 IPR003173 GO:0003677|GO:0006355
Ssu4g0122 403 SUPERFAMILY Retrovirus zinc finger-like domains 346 380 IPR036875 GO:0003676|GO:0008270
Ssu4g0122 403 Pfam gag-polypeptide of LTR copia-type 179 314 - -
Ssu4g0122 403 MobiDBLite consensus disorder prediction 384 403 - -
Ssu4g0122 403 SUPERFAMILY ssDNA-binding transcriptional regulator domain 38 89 IPR009044 GO:0003677|GO:0006355
Ssu4g0122 403 ProSiteProfiles Zinc finger CCHC-type profile. 360 373 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0122 Ssu-Chr4 2081297 2083956 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Ssu4g0122 Retrotran_gag_2 1.6e-14 CL0523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0122 - - gmx:100800963 572.007