Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0120 ATGAAGGTGGACGCGGGGTGGGGGCGCGTGGCGTGGGACGACGAGGAGAAGGCGATGGTCGGGGCCGTTCTGGGCGGTCGAGCTTTGGAATTTCTGATGACAAACTCGGTGTGGAATGAGAGCGTTTTGATGGCGGTTGGGAGCGAGGAGGGGCTGCAGAACAAGCTCTCGGATCTGGTGGAGCGTCCCAACGCGTCCAATTTCAGTTGGAACTACGCCATCTTCTGGCAGCGTGTCCAGTCAAAATCCGGCGACTGGGTTCTTGGCTGGGGAGACGGGTGCTGCAGGGAGCCCAacgaggaagaagaagaagaagaagaagaagaagaaggtgcGGTGAGAGGAACACTGAGGCTCGTGGAGGAGGAGATGCAGCAGAGGATGAGGAAGAGGGTGCTGCAGAAGCTGCACACGGCGTTCGGTGGTTCGGATGAGGACAATTACGCTTTTGGCCTCGACCATGTCACTGACACCGAGATGTTCTTTCTCGCCTCCATGTACTTCTCCTTCCCTCGCGGCCATGGCGGCCCAGGTAAGTGCTTCGCCTCCGGGAAACATTTGTGGCTCAAATCTGCGTCTCTGTCTGATTACTGCGTGCGTTCTTTCCTGGCTAAATCCGCGGGAATTCAGACTGTTGTTTTGGTCCCTACCGATCTGGGAGTGGTGGAGTTGGGTTCTGTGAGAATGTTGCCCGAGAGTTTTGAACTGTTGCAGGCCGTTAAATCTGTGTTCTCCACGcagtcttcttcttcttcttcgtacCCCCCAACGAACACGAACATGGGTGTTTTTACTGGTTTGGCAATTGGGGATGGTAAGGTGGACGGAGGAGGAGTTCCAATTCCGAAGGTTTTTGGGAACGCAATCGGCAATCGGACACATTTCAGAGAGAAACTTGCTGTTAGAAAAATGGAGGATAATAGGCCTTGGGGAGGTCAGCCCAATGGGGGGAATAATGTAAATGTTAACTTTCCGAATGGTCTTCATGTTTCGAGTTGGGCAGGTGTGAGGCAGCCTGGTCCTGTTGAGATTTTTGCTCCTATGGCATCCACGAGCAGTGTCGCGGAGCTGAGGCAGGATTTCAGGCTTAGCAATAGCTATCATCAAACTCAAAGGCAGGTGCAAATGCAAATTGACTTTACCGGAGCCACTCCAACGCCTTCTTGTGTGAGACCGGTCGTTGGCGAATCAGAACTTTCTGATGTTGAGGCCCCTTGCAAGGAGGAGCAACCGAGTGTTGCCGATGAAAGGAAGCCCAGGAAGCGGGGCAGGAAGCCGGCTAATGGAAGGGAAGAACCCCTCAATCACGTGGAGGCCGAGAGGCAAAGGCGCGAGAAGCTCAACCAGCGGTTCTACGCCTTAAGATCTGTGGTGCCAAACATCTCCAAGATGGACAAGGCGTCCTTGTTGGGCGATGCCATTGCTTACATCAATGAGCTTCAGGCTAAAGTCAAGATCATGGAGGccgagagagagagatttggaAGCACTTCAAAGGATGGTTCAGTTTTGGAGGCCAACTCGAGGTCAGAAAATCAGGAGAAAGAAGCTCCTGATGTGGATATTCAAGCTGTTCAAGATGAGGTCATTGTAAGGGTAAGCTGCCCACTTGATGCTCACCCTGTTTCGAAAATAATCCAAGCAATCAAAGAGGCACAAATCAGTGTTGTAGAGTCAAAACTTGCTGCTGCAAATGATACTATTTTCCACacatttgtaattaagtcccaAGGATCTGAACAGCTCACAAAGGACAAGTTGATTGCTGTTTTTTCCCCACCAGAATCCAACTCATTGCAGCCATTGTCATCAGTTGGATAA 1821 0.4909 MKVDAGWGRVAWDDEEKAMVGAVLGGRALEFLMTNSVWNESVLMAVGSEEGLQNKLSDLVERPNASNFSWNYAIFWQRVQSKSGDWVLGWGDGCCREPNEEEEEEEEEEEGAVRGTLRLVEEEMQQRMRKRVLQKLHTAFGGSDEDNYAFGLDHVTDTEMFFLASMYFSFPRGHGGPGKCFASGKHLWLKSASLSDYCVRSFLAKSAGIQTVVLVPTDLGVVELGSVRMLPESFELLQAVKSVFSTQSSSSSSYPPTNTNMGVFTGLAIGDGKVDGGGVPIPKVFGNAIGNRTHFREKLAVRKMEDNRPWGGQPNGGNNVNVNFPNGLHVSSWAGVRQPGPVEIFAPMASTSSVAELRQDFRLSNSYHQTQRQVQMQIDFTGATPTPSCVRPVVGESELSDVEAPCKEEQPSVADERKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAIAYINELQAKVKIMEAERERFGSTSKDGSVLEANSRSENQEKEAPDVDIQAVQDEVIVRVSCPLDAHPVSKIIQAIKEAQISVVESKLAAANDTIFHTFVIKSQGSEQLTKDKLIAVFSPPESNSLQPLSSVG 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0120 606 MobiDBLite consensus disorder prediction 397 442 - -
Ssu4g0120 606 SMART finulus 437 486 IPR011598 GO:0046983
Ssu4g0120 606 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 431 480 IPR011598 GO:0046983
Ssu4g0120 606 MobiDBLite consensus disorder prediction 495 519 - -
Ssu4g0120 606 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 52 244 IPR025610 -
Ssu4g0120 606 PANTHER MYC 9 593 IPR045084 GO:0003700|GO:0006355
Ssu4g0120 606 Coils Coil 477 497 - -
Ssu4g0120 606 Pfam Helix-loop-helix DNA-binding domain 435 481 IPR011598 GO:0046983
Ssu4g0120 606 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 434 494 IPR036638 GO:0046983
Ssu4g0120 606 CDD bHLH_AtAIB_like 428 493 - -
Ssu4g0120 606 MobiDBLite consensus disorder prediction 401 442 - -
Ssu4g0120 606 PANTHER ABA-INDUCIBLE BHLH-TYPE TRANSCRIPTION FACTOR 9 593 - -
Ssu4g0120 606 Gene3D - 424 496 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0120 Ssu-Chr4 2050007 2051827 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0120 8 606 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 49.921 0.0 548
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu4g0120 bHLH-MYC_N 5.7e-55 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0120 - - gmx:100801502 891.338
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0120 4 2050007 2051827 Ssu4g0120 4 2050007 2051827 ECH
Ssu4g0120 4 2050007 2051827 Ssu4g2962 4 75719720 75721536 PCT