Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0118 ATGGACCATCAACCTCCGCCGTGCCCCGAAGACGACCTCTCCGCCGCCGCCGCAAGCGACACCCCGAGGGGCGGCACGCGCCACCCCGTCTACCGAGGCGTCCGCAAGCGCCGGTGGGGCAAATGGGTCTCCGAAATTCGGGAGCCACGGAAGAAGACGCGCATATGGCTGGGGTCGTTTCCGGTGCCGGAGATGGCGGCGCGAGCATACGACGTCGCAGCGTACTGCCTCAAAGGCCGGAAGGCGCAGCTCAACTTTCCCGACGAGGTGGAGCGCCTGCCGCGGCCGTCGACCCGCACGGCCAGGGACATTCAGGCGGCGGCGGCCGAGGCTGCGCGCATGATGAGTGAGAAGAGTGGCATTGCTTCCGACGACGGAGACAGCGGCGGCGACGATATTTGGGGCGAGATTGAGTTGCCGGAGCTGATGGACGGCGAGTGTTGCTGGAGTTGTCCCGGCGGTTCGTCCTGGACTTCTTCCGGCGACATCGCGGCGTGGCCGGAGGTGGAGCTTTTGCCGCAGCAACCGCCGTTCATGGCGTGTCAATAA 549 0.6667 MDHQPPPCPEDDLSAAAASDTPRGGTRHPVYRGVRKRRWGKWVSEIREPRKKTRIWLGSFPVPEMAARAYDVAAYCLKGRKAQLNFPDEVERLPRPSTRTARDIQAAAAEAARMMSEKSGIASDDGDSGGDDIWGEIELPELMDGECCWSCPGGSSWTSSGDIAAWPEVELLPQQPPFMACQ 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0118 182 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 17 181 - -
Ssu4g0118 182 MobiDBLite consensus disorder prediction 1 31 - -
Ssu4g0118 182 Gene3D AP2/ERF domain 30 88 IPR036955 GO:0003700|GO:0006355
Ssu4g0118 182 PRINTS Ethylene responsive element binding protein signature 69 89 IPR001471 GO:0003700|GO:0006355
Ssu4g0118 182 PRINTS Ethylene responsive element binding protein signature 31 42 IPR001471 GO:0003700|GO:0006355
Ssu4g0118 182 Pfam AP2 domain 29 79 IPR001471 GO:0003700|GO:0006355
Ssu4g0118 182 SUPERFAMILY DNA-binding domain 30 89 IPR016177 GO:0003677
Ssu4g0118 182 CDD AP2 31 88 IPR001471 GO:0003700|GO:0006355
Ssu4g0118 182 SMART rav1_2 30 93 IPR001471 GO:0003700|GO:0006355
Ssu4g0118 182 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 17 181 - -
Ssu4g0118 182 ProSiteProfiles AP2/ERF domain profile. 30 87 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0118 Ssu-Chr4 2010046 2010594 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0118 1 181 AP2-EREBP Transcription Factor Family AT1G01250 54.592 4.78e-55 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Ssu4g0118 AP2 7.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0118 K09286 - gmx:100819971 308.145
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0118 4 2010046 2010594 Ssu4g0118 4 2010046 2010594 ECH
Ssu4g0118 4 2010046 2010594 Ssu4g2963 4 75768135 75768680 PCT