Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0115 ATGGCACATCTGGAGGGTGGTCTCAGGGGCGCGCCGGGGTCTCAGGCAGAAACAGGTGTGGGAGATGGCGATCTGTACACGCAACTATGGAAGTTATGTGCGGGGCCTTTGGTGGATGTTCCCCGCGAAAGGGAGAGAGTTTTCTACTTTCCTCAGGGTCACATGGAACAACTGCAAGCGTCGACTAATCAGGAATTGAACCAGGAACTGAGCCAGCAAATTCCTCATTTCAATCTCCCACCCAAGATTCTCTGCCGCGTTGTGCACATTCAGTTGCTGGCAGAGCAAGAAACCGATGAAGTTTATGCTCGTATCACTTTGCTTCCAGAATCAAATCAAGATGAGCCGACGAGTCCTGACCCAACTCTACCCGAGACCCAAAAACAGACTTTTCACACTTTTAGTAAGATATTAACTGCTTCTGATACTAGCACACATGGAGGATTTTCAGTTCTGCGAAGGCATGCTACCGAGTGTCTGCCTCAATTGGACATGACCCAAACTACCCCCACCCAGGAATTGGTAGCAAAGGACCTTCATGGGTTTGAGTGGAAGTTTAAGCACATATTCAGAGGTCAACCAAGGAGGCACTTGCTTACAACTGGATGGAGTACATTTGTCACATCCAAAAGACTGGCTGCTGGAGATGCTTTTGTGTTTTTAAGGGGAGAGAATGGCGAACTAAGAGTTGGTGTTAGGCGTGTAGCCAGGCAGCAGAGTCCCATGCCTTCATCTGTGATATCAAGCCAGAGCATGCATCTTGGAGTGCTTGCCACTGCTTCTCATGCTGTTTTGACTAGTACCATGTTTGTGGTTTATTACAAACCTAGGACTAGCCAGTTTATTATTGGTTTAAACAAATATCTGGAGGCAGTCAGCAATAAGTTTTCAGTTGGCATGCGTTTTAAGATGAGATTTGAGGTGGAGGATTCACCTGAGAGAAGGTTTTCTGGTACTATTGTTGGGGTTGGGGATGTATCTCCAGGATGGCCAAACTCACAGTGGCGTTCATTGAAGGTTCAATGGGATGAACCAGCAATAATTCCAAGGCCAGAGAGGGTTTCTTCGTGGGAGATAGAGCCTTTTGTTGCTTCTACTGCTTTGAATGTCACTCAACAAGTGGTGAAGAGCAAAAGGTCCAGGCCTGTTGAGGTTTCGTCTTCTGAAATTGCTCCTAATTCCCCTGCTCCAGCATTCTGGTATCATGGACCACAGGACCCTACACCATTAGGTGGCACTGCAGAGGTCCCAAGCAATGAAAACCCAGTTGTATGGTCTTCGAGGCAGAAAGAAATTGATGGCAATCCTATGAATGCTAACAACAGCAGCTCCAGAGTCCGTGTGGAAGGAATGTGGCCCTCTTCGCCACATTTGAACGTCTCTTCAAACTTTTTCCCTGACCCCAAAAACAGCAAAGCTGTTGCAGCACAATCATCTGTCTCTGGTTATGCTCCCGTTTCATCTAGGCCGAATGATGATTCGGCACATGATCCCGTGGAATGTGCTAAAAGGAGTGAGAATCCCATGGATTGCTGGGTATTTGGAGTTAATTTGACTAACAATTTTACTAATGGTACCCTTCCGGATAAAGAACTGGGATGTCCAGCTATTATTCCCAGTGGTCCCAAAGATTCTATTCCTGTTGCTGCATGTGAAAGTGAGGCTGGTCTGAATCCCAATTATGCACTGTCCAATAAGGAGCAGAAGCAAATTATTTCTGATGGATCACTCAGTGAGAGGCAGACAAAGCAAGCCACTGTACCATCCATGAGGACTCGGACCAAGGTGCAAATGCAAGGTGTCGCTGTTGGTCGTGCTGTTGACCTTACTGTGTTAAAAGATTATGATGATCTCATAGATGAGCTTGAGAAAATGTTTGATATTAAGGGAGAGCTTCGAGTACAAACCAAATGGGCAATTACTTTTactgatgatgaaaatgatatgaTGCTTGTTGGTGATGATCCATGGCCGGAGTTCTGTACCATGGTGAAGAggatttttatttgttcaagGGAAGATGTGAAGAAGATGAAATGCAAGCATTCTGCTTCTTCATCAGAGGGTGAAGAGACTTTGTTGAGTGCAGATTCGCAGAATAGGGATGAGATGCAGCAAATCTCTTGCAATTTGACAGCTTAa 2142 0.4524 MAHLEGGLRGAPGSQAETGVGDGDLYTQLWKLCAGPLVDVPRERERVFYFPQGHMEQLQASTNQELNQELSQQIPHFNLPPKILCRVVHIQLLAEQETDEVYARITLLPESNQDEPTSPDPTLPETQKQTFHTFSKILTASDTSTHGGFSVLRRHATECLPQLDMTQTTPTQELVAKDLHGFEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLAAGDAFVFLRGENGELRVGVRRVARQQSPMPSSVISSQSMHLGVLATASHAVLTSTMFVVYYKPRTSQFIIGLNKYLEAVSNKFSVGMRFKMRFEVEDSPERRFSGTIVGVGDVSPGWPNSQWRSLKVQWDEPAIIPRPERVSSWEIEPFVASTALNVTQQVVKSKRSRPVEVSSSEIAPNSPAPAFWYHGPQDPTPLGGTAEVPSNENPVVWSSRQKEIDGNPMNANNSSSRVRVEGMWPSSPHLNVSSNFFPDPKNSKAVAAQSSVSGYAPVSSRPNDDSAHDPVECAKRSENPMDCWVFGVNLTNNFTNGTLPDKELGCPAIIPSGPKDSIPVAACESEAGLNPNYALSNKEQKQIISDGSLSERQTKQATVPSMRTRTKVQMQGVAVGRAVDLTVLKDYDDLIDELEKMFDIKGELRVQTKWAITFTDDENDMMLVGDDPWPEFCTMVKRIFICSREDVKKMKCKHSASSSEGEETLLSADSQNRDEMQQISCNLTA 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0115 713 Gene3D - 587 679 - -
Ssu4g0115 713 ProSiteProfiles PB1 domain profile. 591 672 IPR000270 GO:0005515
Ssu4g0115 713 SMART B3_2 134 236 IPR003340 GO:0003677
Ssu4g0115 713 Pfam B3 DNA binding domain 134 234 IPR003340 GO:0003677
Ssu4g0115 713 CDD B3_DNA 134 234 IPR003340 GO:0003677
Ssu4g0115 713 ProSiteProfiles B3 DNA-binding domain profile. 134 236 IPR003340 GO:0003677
Ssu4g0115 713 Gene3D - 131 235 IPR015300 -
Ssu4g0115 713 PANTHER AUXIN RESPONSE FACTOR 11 10 686 - -
Ssu4g0115 713 Pfam Auxin response factor 260 339 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Ssu4g0115 713 SUPERFAMILY DNA-binding pseudobarrel domain 122 263 IPR015300 -
Ssu4g0115 713 Gene3D - 295 367 - -
Ssu4g0115 713 SUPERFAMILY CAD & PB1 domains 588 667 - -
Ssu4g0115 713 Pfam AUX/IAA family 581 627 IPR033389 -
Ssu4g0115 713 Pfam AUX/IAA family 636 672 IPR033389 -
Ssu4g0115 713 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 10 686 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0115 Ssu-Chr4 1928142 1932336 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0115 21 678 B3 DNA Binding Superfamily AT4G23980 57.768 0.0 674
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Ssu4g0115 B3 7.5e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0115 K14486 - gmx:100820503 1133.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0115 4 1928142 1932336 Ssu4g0115 4 1928142 1932336 ECH