Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Ssu4g0111 | ATGGGTTTCCATGCCGAGGCACAGGCGAGGATACATCAACCTTGCGCAGCTTGCAGGATGTTACGCCGCAGATGTGACAATAAGTGCCTACTTGCTCCATATTTCCCAACTGATGAGGTTGAGAAATTTGTTGGAGTGCATAAAGTGTTTGGTGCTAGCAACGTTATCAAAATGATTCAgATGGTGGAGGAAACAAAGAGAGAGGATGCTGTTAAAGCCATGGTCTACGAGGCAACGGCAAGGCTTAGAGACCCAGTTTATGGCAGTGCTGGAGCTATTTACCAGTTACAAAAGATGATTCAGGAACTGAAAGCACAGCTGGAGTCGATAAAAACTCGGGTATCAGAGATGCGAGAACTAAAAGACCAGTTGTTAAGCATTCGTAACAACAACGCTCATGGCCACCATGATCCTTTATTATTTCCCGTCAATGACCCTATCTTTGATGGTTACGGTACTTTGTCGGCAGACTTTGATCATCTCATGGCCTCAGATCCATTTGAATTTCCTGTAGAAGGTGGCCGGGTAtatagcaataataatattaataatatgtcaACGCCCTCCTGCTAG | 573 | 0.4346 | MGFHAEAQARIHQPCAACRMLRRRCDNKCLLAPYFPTDEVEKFVGVHKVFGASNVIKMIQMVEETKREDAVKAMVYEATARLRDPVYGSAGAIYQLQKMIQELKAQLESIKTRVSEMRELKDQLLSIRNNNAHGHHDPLLFPVNDPIFDGYGTLSADFDHLMASDPFEFPVEGGRVYSNNNINNMSTPSC | 190 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Ssu4g0111 | 190 | Pfam | Lateral organ boundaries (LOB) domain | 14 | 111 | IPR004883 | - | |
Ssu4g0111 | 190 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 6 | 165 | - | - | |
Ssu4g0111 | 190 | ProSiteProfiles | LOB domain profile. | 13 | 114 | IPR004883 | - | |
Ssu4g0111 | 190 | Coils | Coil | 93 | 120 | - | - | |
Ssu4g0111 | 190 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 1-LIKE | 6 | 165 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Ssu4g0111 | Ssu-Chr4 | 1863163 | 1864185 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Ssu4g0111 | 11 | 130 | AS2 family | AT2G28500 | 53.333 | 6.46e-43 | 141 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | LOB | Ssu4g0111 | LOB | 4.5e-38 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Ssu4g0111 | - | - | ccaj:109796546 | 294.278 |