Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0111 ATGGGTTTCCATGCCGAGGCACAGGCGAGGATACATCAACCTTGCGCAGCTTGCAGGATGTTACGCCGCAGATGTGACAATAAGTGCCTACTTGCTCCATATTTCCCAACTGATGAGGTTGAGAAATTTGTTGGAGTGCATAAAGTGTTTGGTGCTAGCAACGTTATCAAAATGATTCAgATGGTGGAGGAAACAAAGAGAGAGGATGCTGTTAAAGCCATGGTCTACGAGGCAACGGCAAGGCTTAGAGACCCAGTTTATGGCAGTGCTGGAGCTATTTACCAGTTACAAAAGATGATTCAGGAACTGAAAGCACAGCTGGAGTCGATAAAAACTCGGGTATCAGAGATGCGAGAACTAAAAGACCAGTTGTTAAGCATTCGTAACAACAACGCTCATGGCCACCATGATCCTTTATTATTTCCCGTCAATGACCCTATCTTTGATGGTTACGGTACTTTGTCGGCAGACTTTGATCATCTCATGGCCTCAGATCCATTTGAATTTCCTGTAGAAGGTGGCCGGGTAtatagcaataataatattaataatatgtcaACGCCCTCCTGCTAG 573 0.4346 MGFHAEAQARIHQPCAACRMLRRRCDNKCLLAPYFPTDEVEKFVGVHKVFGASNVIKMIQMVEETKREDAVKAMVYEATARLRDPVYGSAGAIYQLQKMIQELKAQLESIKTRVSEMRELKDQLLSIRNNNAHGHHDPLLFPVNDPIFDGYGTLSADFDHLMASDPFEFPVEGGRVYSNNNINNMSTPSC 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0111 190 Pfam Lateral organ boundaries (LOB) domain 14 111 IPR004883 -
Ssu4g0111 190 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 6 165 - -
Ssu4g0111 190 ProSiteProfiles LOB domain profile. 13 114 IPR004883 -
Ssu4g0111 190 Coils Coil 93 120 - -
Ssu4g0111 190 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1-LIKE 6 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0111 Ssu-Chr4 1863163 1864185 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0111 11 130 AS2 family AT2G28500 53.333 6.46e-43 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Ssu4g0111 LOB 4.5e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0111 - - ccaj:109796546 294.278
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0111 4 1863163 1864185 Ssu4g0111 4 1863163 1864185 ECH