Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0105 ATGTATGACAGTTATAAGGGCTTTGATGAAGTTGACGGAATAGAAGTTGCTTGGAACCAAGTTTGGATTGATGAAATCCTACAATCAATAGATGATCTTGCGAAGTTGCATTCCGAAGTTAATCTCTTGAAATACCGTAAAAGGCATAGATATGTTGACATAAAAGCCATAAGAGGTTGGGCTAGACAAATTCTTCAAGGCTTGGTATACCTTCATAGTCACAATCCTCCTATTATTCATAGAGACTTGAAATGTGACAACATCTTTGTGAATGCAAACCATGGAGAAGTTAAGATAGGAGACTTTGGTTTGGCAATTGTCATGCAACAACCAACTGCTCGAAGTGTTATTGgGACTCATAAATTTATGGCTCCAAAACTATATGAAGAGGAATACAATGAACTTGATGATGTCTATTCTTTTGGGATGTGCATATTGGAGATGGTTACTCTTGAGTACCCGTATAGTGAATGCAAAAATCCAACCcaaatttttaagaaagtaaCCTCTGGCATTGAACCTGCATCCCTTAAAAGGGTGAGTGATCCCCAAATTAAGGAGTTTATTAAGAAGTGTCTCGTTTCAATATCCAAGAGATTGTCTGCAAAGGATCTTCTTAAAGACCCATTTCTGCATGTTTAG 642 0.366 MYDSYKGFDEVDGIEVAWNQVWIDEILQSIDDLAKLHSEVNLLKYRKRHRYVDIKAIRGWARQILQGLVYLHSHNPPIIHRDLKCDNIFVNANHGEVKIGDFGLAIVMQQPTARSVIGTHKFMAPKLYEEEYNELDDVYSFGMCILEMVTLEYPYSECKNPTQIFKKVTSGIEPASLKRVSDPQIKEFIKKCLVSISKRLSAKDLLKDPFLHV 213
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0105 213 Gene3D Transferase(Phosphotransferase) domain 1 37 213 - -
Ssu4g0105 213 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK8-RELATED 5 44 - -
Ssu4g0105 213 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 41 212 - -
Ssu4g0105 213 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK8-RELATED 41 212 - -
Ssu4g0105 213 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 5 44 - -
Ssu4g0105 213 SUPERFAMILY Protein kinase-like (PK-like) 5 211 IPR011009 -
Ssu4g0105 213 Pfam Protein kinase domain 42 211 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g0105 213 ProSiteProfiles Protein kinase domain profile. 1 211 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g0105 213 ProSitePatterns Serine/Threonine protein kinases active-site signature. 78 90 IPR008271 GO:0004672|GO:0006468
Ssu4g0105 213 SMART serkin_6 5 211 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Ssu4g0105 Ssu-Chr4 1704193 1705412 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0105 5 211 MAP Kinase Kinase Kinase AT5G41990 60.494 3.98e-92 278
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Ssu4g0105 Pkinase 5.5e-35 CL0016
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0105 K08867 - gmx:100809602 322.013
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0105 4 1704193 1705412 Ssu4g0105 4 1704193 1705412 ECH