Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Ssu4g0102 | ATGAGGCCGGTTTTCGTTGGCAATTTCGAGTACGACACCCGTCAATCAGAGCTCGAACGCTTGTTCGCCAAGTATGGCAGGATTGACCGCGTCGACATGAAATCTGGTTTTGCTTTTGTCTATTATGAAGACGAGCGAGATGCCGAAGATGCAATTCGTGCACTCGATAACTTTCAGTTCGGATATGAAAAGCGAAGACTGTCTGTGGAATGGGCTAGGgGTGAACGTGGCCGCCATCGGGATGGCTCAAAGGCAAACCAGAGACCCACAAAAACCCTATTTGTGATTAATTTTGACCCAATTCGTACCAGAGTCCGTGATATAGAAAGACACTTTGAACCTTATGGGAAGGTTCTTAACGTTAGAATTCGTCGGAACTTTTCATTTGTGCAGTTTGAAACACAAGAAGATGCTACTAAAGCTCTTGAGTGCACACATATGAGTAAGATACTGGACAGAGTGGTGTCTGTTGAGTATGCTCTGAGGGATGATGATGAAAAGGGTGACAAATATGGTGACAGTCCTAGAAGAGGGGGTTATGGGAGATCCCCCAGTCCAGTTTATAGGAGGCGACCAAGTCCTGACTATGGTCGTCCACGCAGCCCTGCGTATGATAGGTACAATGGACCAGCCTATGACAAGCGCAAGAGCCCTGATTATGGTAGGCCTAGAAGCCCTGAATATGGTAGACATCGCAGTCGTTCACCAGTGCGAAGGTCAAGAACTTAG | 729 | 0.4705 | MRPVFVGNFEYDTRQSELERLFAKYGRIDRVDMKSGFAFVYYEDERDAEDAIRALDNFQFGYEKRRLSVEWARGERGRHRDGSKANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFSFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDDEKGDKYGDSPRRGGYGRSPSPVYRRRPSPDYGRPRSPAYDRYNGPAYDKRKSPDYGRPRSPEYGRHRSRSPVRRSRT | 242 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Ssu4g0102 | 242 | PANTHER | SERINE/ARGININE-RICH SPLICING FACTOR RS31-RELATED | 4 | 212 | IPR029537 | GO:0000398|GO:0005681 | |
Ssu4g0102 | 242 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 2 | 74 | IPR000504 | GO:0003723 | |
Ssu4g0102 | 242 | Gene3D | - | 84 | 173 | IPR012677 | - | |
Ssu4g0102 | 242 | Gene3D | - | 1 | 83 | IPR012677 | - | |
Ssu4g0102 | 242 | SMART | rrm1_1 | 3 | 70 | IPR000504 | GO:0003723 | |
Ssu4g0102 | 242 | SMART | rrm1_1 | 92 | 158 | IPR000504 | GO:0003723 | |
Ssu4g0102 | 242 | MobiDBLite | consensus disorder prediction | 165 | 242 | - | - | |
Ssu4g0102 | 242 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 91 | 162 | IPR000504 | GO:0003723 | |
Ssu4g0102 | 242 | CDD | RRM2_AtRSp31_like | 92 | 161 | - | - | |
Ssu4g0102 | 242 | MobiDBLite | consensus disorder prediction | 209 | 233 | - | - | |
Ssu4g0102 | 242 | SUPERFAMILY | RNA-binding domain, RBD | 2 | 165 | IPR035979 | GO:0003676 | |
Ssu4g0102 | 242 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 93 | 155 | IPR000504 | GO:0003723 | |
Ssu4g0102 | 242 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 4 | 61 | IPR000504 | GO:0003723 | |
Ssu4g0102 | 242 | PANTHER | SERINE/ARGININE RICH SPLICING FACTOR | 4 | 212 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Ssu4g0102 | Ssu-Chr4 | 1695743 | 1697686 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Ssu4g0102 | 4 | 168 | Eukaryotic Initiation Factors Gene Family | AT1G49760 | 24.731 | 6.37e-10 | 57.0 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Ssu4g0102 | K12893 | - | zju:107423654 | 408.683 |