Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0102 ATGAGGCCGGTTTTCGTTGGCAATTTCGAGTACGACACCCGTCAATCAGAGCTCGAACGCTTGTTCGCCAAGTATGGCAGGATTGACCGCGTCGACATGAAATCTGGTTTTGCTTTTGTCTATTATGAAGACGAGCGAGATGCCGAAGATGCAATTCGTGCACTCGATAACTTTCAGTTCGGATATGAAAAGCGAAGACTGTCTGTGGAATGGGCTAGGgGTGAACGTGGCCGCCATCGGGATGGCTCAAAGGCAAACCAGAGACCCACAAAAACCCTATTTGTGATTAATTTTGACCCAATTCGTACCAGAGTCCGTGATATAGAAAGACACTTTGAACCTTATGGGAAGGTTCTTAACGTTAGAATTCGTCGGAACTTTTCATTTGTGCAGTTTGAAACACAAGAAGATGCTACTAAAGCTCTTGAGTGCACACATATGAGTAAGATACTGGACAGAGTGGTGTCTGTTGAGTATGCTCTGAGGGATGATGATGAAAAGGGTGACAAATATGGTGACAGTCCTAGAAGAGGGGGTTATGGGAGATCCCCCAGTCCAGTTTATAGGAGGCGACCAAGTCCTGACTATGGTCGTCCACGCAGCCCTGCGTATGATAGGTACAATGGACCAGCCTATGACAAGCGCAAGAGCCCTGATTATGGTAGGCCTAGAAGCCCTGAATATGGTAGACATCGCAGTCGTTCACCAGTGCGAAGGTCAAGAACTTAG 729 0.4705 MRPVFVGNFEYDTRQSELERLFAKYGRIDRVDMKSGFAFVYYEDERDAEDAIRALDNFQFGYEKRRLSVEWARGERGRHRDGSKANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFSFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDDEKGDKYGDSPRRGGYGRSPSPVYRRRPSPDYGRPRSPAYDRYNGPAYDKRKSPDYGRPRSPEYGRHRSRSPVRRSRT 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0102 242 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RS31-RELATED 4 212 IPR029537 GO:0000398|GO:0005681
Ssu4g0102 242 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Ssu4g0102 242 Gene3D - 84 173 IPR012677 -
Ssu4g0102 242 Gene3D - 1 83 IPR012677 -
Ssu4g0102 242 SMART rrm1_1 3 70 IPR000504 GO:0003723
Ssu4g0102 242 SMART rrm1_1 92 158 IPR000504 GO:0003723
Ssu4g0102 242 MobiDBLite consensus disorder prediction 165 242 - -
Ssu4g0102 242 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 162 IPR000504 GO:0003723
Ssu4g0102 242 CDD RRM2_AtRSp31_like 92 161 - -
Ssu4g0102 242 MobiDBLite consensus disorder prediction 209 233 - -
Ssu4g0102 242 SUPERFAMILY RNA-binding domain, RBD 2 165 IPR035979 GO:0003676
Ssu4g0102 242 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 155 IPR000504 GO:0003723
Ssu4g0102 242 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 61 IPR000504 GO:0003723
Ssu4g0102 242 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 4 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0102 Ssu-Chr4 1695743 1697686 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0102 4 168 Eukaryotic Initiation Factors Gene Family AT1G49760 24.731 6.37e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0102 K12893 - zju:107423654 408.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0102 4 1695743 1697686 Ssu4g0102 4 1695743 1697686 ECH