Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0099 ATGAGCACCATTGCCATGATTGTTTCTAACCCGATATTTCTCTTAATCCTCGGCGCCGCCATCGTTTTATTCGCGACGCTGTTCCAAAGGGGGTGGGCGAAGAAGCTATGGAGAACCATCGAAGATTGGTTCCACGTGTACCAGTTCCTGAAAGTCCCAGAATTGAACGAAACGACGCAGCACAACCACCTCTACAGGAAGGTCTCCCTCTACTTACATTCCCTACCCTCCATCGAAGACGCGGACTTCGCCAACCTCGTCACGGGCAAGAAGCAAAACGACATCGTCCTCTGCCTCGGCCCCAACCAAACCATCCAGGACTACTTTCTCGGAGCCACACTCTTCTGGTTCGTCCAAACCGGTGATCCGAACCGAACCGGAACCTTCGTTCTGAAGATCAGAAAAGTGGACAAGCGGCGAATCCTCCGTCCTTACCTGCAGCACATTCACGCCGTCGCCGACGAAATCGAGCAGCAAGGGAAGCGCGACTTGCGCCTCTTCATGAACAGCGCCGACAATTTCGGACGGTGCTGGAGATCCGTTCCGTTCACGCACCCGTCCACGTTCGACACCGTCGCCATGGAACCGGATCTCAAGAACCGAGTCAAATCCGATCTCGAATCGTTCCTCAGAGCGAAGCAGTACTACCACCGCCTCGGCCGCGTCTGGAAACGGAGCTTCCTCCTGTACGGTGCCTCCGGCACCGGAAAATCGAGCTTCATCGCCGCCATGGCCAATTTCCTCTGCTACGACGTCTACGACATCGACCTCTGCAAAATCCCTAGCGATTCGGATCTGAAATCGCTCCTCCTGCAAACGACGCCGAAGTCGGTGGTGGTGATCGAGGACCTGGACCGGTTCCTCGCGGACAAATCGACGCGCTCAATACTCAACTTCATGGACGGGCTTCTCACCTCGTGTTGCGCCGAAGAGAGGGTGATGGTGTTCACGATGAACACGAAGGAGCACGCGGACCCGAACCTGCTTCGCCCGGGTCGGGTCGACGTGCACATTCATTTTCCGCTTTGTGATTTTTCAGCGTTTAAGACGCTGGCGAGTAGTTACCTTGGGGTGAAGGACCATAAGTTGTTCCCTCAGGTACAGGAGATTTTTCAAAACGGTGCGAGTTTGAGCCCCGCTGAAATCGGTGAGTTGATGATCGCGAACCGGAACTCCCCGAGTCGGGCCATTAAATCGGTTATCACCGCCTTGCAAACGGACGGTGATGGCAGGGGGTGCGGCTTGATCGGACGGCAGACGGAGGATGACGAGTTGGATGAACCTGATGGAGTGATGTGCGCTGAGGGTCTCCATACGGTTAAGGATTTGAGGAGACTGTACGGTTTTTTCAGGTTCAGGGTTACTAGAAGATCTTCGTCGTCCAATGCTTCCTTGCCCGCGAGCCCATTGCGATTGTGTGAGTGA 1425 0.5502 MSTIAMIVSNPIFLLILGAAIVLFATLFQRGWAKKLWRTIEDWFHVYQFLKVPELNETTQHNHLYRKVSLYLHSLPSIEDADFANLVTGKKQNDIVLCLGPNQTIQDYFLGATLFWFVQTGDPNRTGTFVLKIRKVDKRRILRPYLQHIHAVADEIEQQGKRDLRLFMNSADNFGRCWRSVPFTHPSTFDTVAMEPDLKNRVKSDLESFLRAKQYYHRLGRVWKRSFLLYGASGTGKSSFIAAMANFLCYDVYDIDLCKIPSDSDLKSLLLQTTPKSVVVIEDLDRFLADKSTRSILNFMDGLLTSCCAEERVMVFTMNTKEHADPNLLRPGRVDVHIHFPLCDFSAFKTLASSYLGVKDHKLFPQVQEIFQNGASLSPAEIGELMIANRNSPSRAIKSVITALQTDGDGRGCGLIGRQTEDDELDEPDGVMCAEGLHTVKDLRRLYGFFRFRVTRRSSSSNASLPASPLRLCE 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0099 474 Gene3D - 179 338 IPR027417 -
Ssu4g0099 474 Pfam ATPase family associated with various cellular activities (AAA) 228 342 IPR003959 GO:0005524|GO:0016887
Ssu4g0099 474 Gene3D - 339 404 - -
Ssu4g0099 474 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 403 IPR027417 -
Ssu4g0099 474 CDD AAA 224 342 - -
Ssu4g0099 474 PANTHER BCS1 AAA-TYPE ATPASE 10 435 - -
Ssu4g0099 474 SMART AAA_5 223 344 IPR003593 -
Ssu4g0099 474 Pfam Domain associated at C-terminal with AAA 35 117 IPR025753 -
Ssu4g0099 474 PANTHER BNAC04G00800D PROTEIN 10 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0099 Ssu-Chr4 1667781 1669205 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0099 - K08900 gmx:100805212 793.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0099 4 1667781 1669205 Ssu4g0099 4 1667781 1669205 ECH
Ssu4g2989 4 76314428 76315876 Ssu4g0099 4 1667781 1669205 ECH
Ssu4g0099 4 1667781 1669205 Ssu4g2989 4 76314428 76315876 PCT