Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0090 ATGAGCACAACTGTCCTTGATCGTACGGGATGGGGAGAAGAGTGTGAAGGGCTTTCACTTGCATCGGCCTCACCAACAGGGAAGAAGCGAGGAGTGCCAAAAGGGTGTTTGGCAATCAAGGTGGGTCAAGGAGAAGAGCAACAAAGGTTTGTGGTGCCGGTGATGTACTTCAATCACCCACTCTTCATGCAGCTCCTCAAGGAGGCGGAGGAAGAGTACGGCTTCGATCAAAAAGGAACCATTACCATCCCTTGTCATGTCGAGGAGTTTAGGAACGTTCGAGGCATGATTGATAGGGAAAAGTCcctccatcaccaccatcaTATTGGCTGCTTTGGCTTCTGa 345 0.4754 MSTTVLDRTGWGEECEGLSLASASPTGKKRGVPKGCLAIKVGQGEEQQRFVVPVMYFNHPLFMQLLKEAEEEYGFDQKGTITIPCHVEEFRNVRGMIDREKSLHHHHHIGCFGF 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0090 114 PANTHER SMALL AUXIN-UP RNA-RELATED 28 108 - -
Ssu4g0090 114 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 28 108 IPR003676 GO:0009733
Ssu4g0090 114 Pfam Auxin responsive protein 23 94 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0090 Ssu-Chr4 1477240 1478034 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0090 32 110 Calmodulin-binding Proteins AT5G20810 48.750 7.39e-19 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0090 K14488 - gmx:111188139 173.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0090 4 1477240 1478034 Ssu4g0090 4 1477240 1478034 ECH
Ssu4g2997 4 76587001 76587366 Ssu4g0090 4 1477240 1478034 ECH