Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Ssu4g0090 | ATGAGCACAACTGTCCTTGATCGTACGGGATGGGGAGAAGAGTGTGAAGGGCTTTCACTTGCATCGGCCTCACCAACAGGGAAGAAGCGAGGAGTGCCAAAAGGGTGTTTGGCAATCAAGGTGGGTCAAGGAGAAGAGCAACAAAGGTTTGTGGTGCCGGTGATGTACTTCAATCACCCACTCTTCATGCAGCTCCTCAAGGAGGCGGAGGAAGAGTACGGCTTCGATCAAAAAGGAACCATTACCATCCCTTGTCATGTCGAGGAGTTTAGGAACGTTCGAGGCATGATTGATAGGGAAAAGTCcctccatcaccaccatcaTATTGGCTGCTTTGGCTTCTGa | 345 | 0.4754 | MSTTVLDRTGWGEECEGLSLASASPTGKKRGVPKGCLAIKVGQGEEQQRFVVPVMYFNHPLFMQLLKEAEEEYGFDQKGTITIPCHVEEFRNVRGMIDREKSLHHHHHIGCFGF | 114 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Ssu4g0090 | 114 | PANTHER | SMALL AUXIN-UP RNA-RELATED | 28 | 108 | - | - | |
Ssu4g0090 | 114 | PANTHER | AUXIN-INDUCED PROTEIN-LIKE-RELATED | 28 | 108 | IPR003676 | GO:0009733 | |
Ssu4g0090 | 114 | Pfam | Auxin responsive protein | 23 | 94 | IPR003676 | GO:0009733 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Ssu4g0090 | Ssu-Chr4 | 1477240 | 1478034 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Ssu4g0090 | 32 | 110 | Calmodulin-binding Proteins | AT5G20810 | 48.750 | 7.39e-19 | 75.9 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Ssu4g0090 | K14488 | - | gmx:111188139 | 173.326 |