Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0085 atgagcGCGAAGGAAGCGAAAGGTCGTATCCGGGTTGGGAAATACGAGTTGGGAAAAACTATTGGAGAAGGAAGCTTTGCGAAGGTCAAGTTCGCCAGGGACGTCGAGAACGGGAACTACGTTGCCATCAAAATCCTCGACCGTCAACATGTCCTCCGCCACAACATGATGGAACAACTGATGAGAGAAATATCAACGATGAAGCTGATCAATCACCCAAacgttattaaaatatttgagGTGATGGCAAGCAAAACAAAGATTTACATTGTTCTGGAGTTTGTTAAAGGGGGAGAACTATTTGACAAAATAGCTGCAAATGGGAGACTTAAAGAAGATGAAGCAAGAAATTATTTCCAACAACTTATTAATGCTGTTGACTACTGCCATAGTAGAGGCGTGTATCACAGAGATTTGAAGCCTGAGAATCTTCTTCTGGACTCGAGTAGTGTTCTTAAAGTTTCAGATTTTGGATTGAGTACGTACTCACAGAAAGAGGATGAACTGCTCCGCACTGCATGTGGAACCCCGAATTATGTTGCTCCTGAGGTGCTTAATGATAGAGGTTATGTTGGTTCTTCATCTGATATCTGGTCTTGTGGAGTCATTCTCTTTGTACTTATGGCTGGCTACTTGCCTTTTGATGAGCCAAGTCATATGGCTTTGTACAGGAAAATTGGCAGAGCAGAATTCTCTTGTCCATCATGGTTTCCGCCACAGGCAAAGAAACTGCTGAAACGCATTCTTGACCCAAACCCTCTAACGAGGATAAAAATTCCTGAGCTCTTAGAAGATGAATGGTTCAAGAAAGGATACAAGCCAGCATCCTTTACCGAGGAAGAGGACCTAAGTGTAGATGATGTAGCCGTTGCTTTCAATGAGTCTAATGAAAATCTAGTgacaaagagaaaagagaaaccCGTCTCCATGAATGCTTTTGAGCTCATTTCTAGGTCACAAAGTTTCAATCTTGACAGTTTGTTTGAGAAGCAAACGGGTCAAGTAAAGCGAGAAACCCGTTTTACTTCACAGTGCCCTGCAaatgaaattatgtttaaaatcgAGGAAGCAGCCAAGCCACTGGGCTTTAATGTACACAAGCGAAATTACAAGATGAAGCTGCAAGGTGACAAGAGTGGGAGGAAGGGTCACCTTTCAGTGGCGACTGAGGTTTTTGAAGTGGCTCCCTCCTTGCACATGGTGGAGCTGCGAAAGACCGGGGGTGATACACTGGAGTTTCATAAGTTCTACAAAATCTTCTCATCAGGGTTGCATGACATAGTGTGGCATACTGAagggaaaaaatga 1308 0.4128 MSAKEAKGRIRVGKYELGKTIGEGSFAKVKFARDVENGNYVAIKILDRQHVLRHNMMEQLMREISTMKLINHPNVIKIFEVMASKTKIYIVLEFVKGGELFDKIAANGRLKEDEARNYFQQLINAVDYCHSRGVYHRDLKPENLLLDSSSVLKVSDFGLSTYSQKEDELLRTACGTPNYVAPEVLNDRGYVGSSSDIWSCGVILFVLMAGYLPFDEPSHMALYRKIGRAEFSCPSWFPPQAKKLLKRILDPNPLTRIKIPELLEDEWFKKGYKPASFTEEEDLSVDDVAVAFNESNENLVTKRKEKPVSMNAFELISRSQSFNLDSLFEKQTGQVKRETRFTSQCPANEIMFKIEEAAKPLGFNVHKRNYKMKLQGDKSGRKGHLSVATEVFEVAPSLHMVELRKTGGDTLEFHKFYKIFSSGLHDIVWHTEGKK 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0085 435 Gene3D Kinase associated domain 1, KA1 304 430 - -
Ssu4g0085 435 Gene3D Phosphorylase Kinase; domain 1 4 94 - -
Ssu4g0085 435 ProSiteProfiles Protein kinase domain profile. 15 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g0085 435 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 3 7 432 - -
Ssu4g0085 435 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Ssu4g0085 435 Gene3D Transferase(Phosphotransferase) domain 1 95 295 - -
Ssu4g0085 435 PANTHER - 7 432 - -
Ssu4g0085 435 Pfam Protein kinase domain 15 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g0085 435 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672|GO:0006468
Ssu4g0085 435 ProSiteProfiles NAF domain profile. 305 329 IPR018451 GO:0007165
Ssu4g0085 435 SMART serkin_6 15 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g0085 435 CDD CIPK_C 311 418 - -
Ssu4g0085 435 SUPERFAMILY Protein kinase-like (PK-like) 11 284 IPR011009 -
Ssu4g0085 435 Pfam NAF domain 307 367 IPR004041 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0085 Ssu-Chr4 1403261 1409702 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0085 9 433 CBL-interacting serine-threonine protein kinases AT1G01140 73.380 0.0 664
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Ssu4g0085 Pkinase 4.5e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0085 - - gmx:100777218 802.357
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0085 4 1403261 1409702 Ssu4g0085 4 1403261 1409702 ECH