Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Ssu4g0082 | ATGTCAGAAGGTGCAGAAATTGATGAGCGTGTGGACCTTGATGAGGAAAATTATATGGAAGAGATGgatgatgatgttgaagaaCAAATAGATGATGATGGAGTGGATGGAGGTGAAGATGAAAATGCTGAAGGTAGTGTTGAGGAACATGAATATGAGGACTTGGCAGCTGAGGCTGGTGGGAAAGACCAATTTCTTGAAGCAGAAAAAAGTGACATTGCCACTGAATTTGGGGATGATGAGCAAAAACTGTCTGTCATTGATGAAGATGAGAAAGAGAAGCATGATGAACTTCTTGCCCTTCCACCTCATGGTTCTGAAGTCTTTATTGGTGGACTTCCTCGGGATGTATGTGAAGAAGATTTAAGGGAATTGTGTGAGCCGATGGGTGATATTCTTGAGGTGCGattaatgaaagacagggacacTGGAGAAAACAAGGGTTATGCCTTTGTggcttttaaaacaaaagaggTAGCGCAAAAGGCTATTGAGGAGATACATAACAAGGAATTTAAGGGAAAAACTTTGAGGTGTTCGCTTTCAGAAACCAAACACAGATTATTTATTGGTAATGTTCCAAAAACTTGGACAGAAGATGAATTTAGGAAAGTTATTGAACGTGTTGGTCCTGGAATTGAAAACATTGAGCTCATAAAGGACCCTCAAAATCCTAGTAGGAATCGTGggtttgcttttgttttgtattacaataatgCATGTGCTGATTATTCACGGCAAAAGATGTCAAGTGCGAGTTTTAAGCTGGATGGCAATGCCCCAACTGTCACATGGGCAGATCCAAAGAACTCACCTGACCATTCTGCTTCTTCACAGGTTAAAGCTCTATACGTCAAAAACATACCGGAGAATGTTACTACTGAACAACTGAAGGAACTATTCCGCCGACATGGAGAAGTAACAAAAGTGGTCATGCCACCTGGCAAAGCTGGAGGGAAACGTGATTTTGGTTTCATTCATTATGTGGAGAGGTCAAGTGCATTGAAAGCTGTAAAAGATACAGAGAAATATGAAATTGATGGCCAAGTGCTTGAAGTTGTTCTTGCCAAGCCTCAAACTGATAAAAAACCTGATGGAGGTTATGCCTACAATCCTGGACTTCATCCAAACCATCTTCCACATCCCGCATATGGTAACTTTTCTGGAAATCCTTATGGCTCTTTAGGGGCTGGATATGGTGTTGCTACTGGTTATCAACAGCCAATGATATATGGTAGGGGTCCAATGCCAGCAGGAATGCAAATGGTTCCAATGGTGTTACCAGACGGTCGAATTGGCTATGTCCTTCAACAACCTGGTGTACAGGTGCCACCTACCCGACCCCGCAGAATTGATCGGAGCAATGGTCCAAGTGGGCAGCCAGGACGAGGAGGTAGTGGCAATGATGAAGGCAATCGTAGTAGAAGGTATCGACCCTATTAG | 1443 | 0.4068 | MSEGAEIDERVDLDEENYMEEMDDDVEEQIDDDGVDGGEDENAEGSVEEHEYEDLAAEAGGKDQFLEAEKSDIATEFGDDEQKLSVIDEDEKEKHDELLALPPHGSEVFIGGLPRDVCEEDLRELCEPMGDILEVRLMKDRDTGENKGYAFVAFKTKEVAQKAIEEIHNKEFKGKTLRCSLSETKHRLFIGNVPKTWTEDEFRKVIERVGPGIENIELIKDPQNPSRNRGFAFVLYYNNACADYSRQKMSSASFKLDGNAPTVTWADPKNSPDHSASSQVKALYVKNIPENVTTEQLKELFRRHGEVTKVVMPPGKAGGKRDFGFIHYVERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKPDGGYAYNPGLHPNHLPHPAYGNFSGNPYGSLGAGYGVATGYQQPMIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVQVPPTRPRRIDRSNGPSGQPGRGGSGNDEGNRSRRYRPY | 480 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Ssu4g0082 | 480 | PANTHER | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN Q | 2 | 478 | - | - | |
Ssu4g0082 | 480 | MobiDBLite | consensus disorder prediction | 439 | 480 | - | - | |
Ssu4g0082 | 480 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 281 | 358 | IPR000504 | GO:0003723 | |
Ssu4g0082 | 480 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 186 | 268 | IPR000504 | GO:0003723 | |
Ssu4g0082 | 480 | MobiDBLite | consensus disorder prediction | 1 | 48 | - | - | |
Ssu4g0082 | 480 | CDD | RRM3_hnRNPR_like | 280 | 358 | - | - | |
Ssu4g0082 | 480 | ProSitePatterns | EF-hand calcium-binding domain. | 40 | 52 | IPR018247 | - | |
Ssu4g0082 | 480 | Gene3D | - | 187 | 267 | IPR012677 | - | |
Ssu4g0082 | 480 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 106 | 184 | IPR000504 | GO:0003723 | |
Ssu4g0082 | 480 | SUPERFAMILY | RNA-binding domain, RBD | 103 | 271 | IPR035979 | GO:0003676 | |
Ssu4g0082 | 480 | CDD | RRM_SF | 108 | 180 | - | - | |
Ssu4g0082 | 480 | Gene3D | - | 268 | 390 | IPR012677 | - | |
Ssu4g0082 | 480 | Gene3D | - | 7 | 186 | IPR012677 | - | |
Ssu4g0082 | 480 | PANTHER | GEO13361P1-RELATED | 2 | 478 | - | - | |
Ssu4g0082 | 480 | SUPERFAMILY | RNA-binding domain, RBD | 274 | 372 | IPR035979 | GO:0003676 | |
Ssu4g0082 | 480 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 188 | 254 | IPR000504 | GO:0003723 | |
Ssu4g0082 | 480 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 108 | 178 | IPR000504 | GO:0003723 | |
Ssu4g0082 | 480 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 283 | 351 | IPR000504 | GO:0003723 | |
Ssu4g0082 | 480 | MobiDBLite | consensus disorder prediction | 8 | 48 | - | - | |
Ssu4g0082 | 480 | SMART | rrm1_1 | 187 | 264 | IPR000504 | GO:0003723 | |
Ssu4g0082 | 480 | SMART | rrm1_1 | 282 | 354 | IPR000504 | GO:0003723 | |
Ssu4g0082 | 480 | SMART | rrm1_1 | 107 | 180 | IPR000504 | GO:0003723 | |
Ssu4g0082 | 480 | SMART | rrm2_1 | 107 | 180 | IPR003954 | GO:0003676 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Ssu4g0082 | Ssu-Chr4 | 1372398 | 1377434 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Ssu4g0082 | 108 | 434 | Eukaryotic Initiation Factors Gene Family | AT1G71770 | 26.178 | 1.33e-18 | 87.0 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Ssu4g0082 | K13161 | - | gmx:100790907 | 862.062 |