Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0082 ATGTCAGAAGGTGCAGAAATTGATGAGCGTGTGGACCTTGATGAGGAAAATTATATGGAAGAGATGgatgatgatgttgaagaaCAAATAGATGATGATGGAGTGGATGGAGGTGAAGATGAAAATGCTGAAGGTAGTGTTGAGGAACATGAATATGAGGACTTGGCAGCTGAGGCTGGTGGGAAAGACCAATTTCTTGAAGCAGAAAAAAGTGACATTGCCACTGAATTTGGGGATGATGAGCAAAAACTGTCTGTCATTGATGAAGATGAGAAAGAGAAGCATGATGAACTTCTTGCCCTTCCACCTCATGGTTCTGAAGTCTTTATTGGTGGACTTCCTCGGGATGTATGTGAAGAAGATTTAAGGGAATTGTGTGAGCCGATGGGTGATATTCTTGAGGTGCGattaatgaaagacagggacacTGGAGAAAACAAGGGTTATGCCTTTGTggcttttaaaacaaaagaggTAGCGCAAAAGGCTATTGAGGAGATACATAACAAGGAATTTAAGGGAAAAACTTTGAGGTGTTCGCTTTCAGAAACCAAACACAGATTATTTATTGGTAATGTTCCAAAAACTTGGACAGAAGATGAATTTAGGAAAGTTATTGAACGTGTTGGTCCTGGAATTGAAAACATTGAGCTCATAAAGGACCCTCAAAATCCTAGTAGGAATCGTGggtttgcttttgttttgtattacaataatgCATGTGCTGATTATTCACGGCAAAAGATGTCAAGTGCGAGTTTTAAGCTGGATGGCAATGCCCCAACTGTCACATGGGCAGATCCAAAGAACTCACCTGACCATTCTGCTTCTTCACAGGTTAAAGCTCTATACGTCAAAAACATACCGGAGAATGTTACTACTGAACAACTGAAGGAACTATTCCGCCGACATGGAGAAGTAACAAAAGTGGTCATGCCACCTGGCAAAGCTGGAGGGAAACGTGATTTTGGTTTCATTCATTATGTGGAGAGGTCAAGTGCATTGAAAGCTGTAAAAGATACAGAGAAATATGAAATTGATGGCCAAGTGCTTGAAGTTGTTCTTGCCAAGCCTCAAACTGATAAAAAACCTGATGGAGGTTATGCCTACAATCCTGGACTTCATCCAAACCATCTTCCACATCCCGCATATGGTAACTTTTCTGGAAATCCTTATGGCTCTTTAGGGGCTGGATATGGTGTTGCTACTGGTTATCAACAGCCAATGATATATGGTAGGGGTCCAATGCCAGCAGGAATGCAAATGGTTCCAATGGTGTTACCAGACGGTCGAATTGGCTATGTCCTTCAACAACCTGGTGTACAGGTGCCACCTACCCGACCCCGCAGAATTGATCGGAGCAATGGTCCAAGTGGGCAGCCAGGACGAGGAGGTAGTGGCAATGATGAAGGCAATCGTAGTAGAAGGTATCGACCCTATTAG 1443 0.4068 MSEGAEIDERVDLDEENYMEEMDDDVEEQIDDDGVDGGEDENAEGSVEEHEYEDLAAEAGGKDQFLEAEKSDIATEFGDDEQKLSVIDEDEKEKHDELLALPPHGSEVFIGGLPRDVCEEDLRELCEPMGDILEVRLMKDRDTGENKGYAFVAFKTKEVAQKAIEEIHNKEFKGKTLRCSLSETKHRLFIGNVPKTWTEDEFRKVIERVGPGIENIELIKDPQNPSRNRGFAFVLYYNNACADYSRQKMSSASFKLDGNAPTVTWADPKNSPDHSASSQVKALYVKNIPENVTTEQLKELFRRHGEVTKVVMPPGKAGGKRDFGFIHYVERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKPDGGYAYNPGLHPNHLPHPAYGNFSGNPYGSLGAGYGVATGYQQPMIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVQVPPTRPRRIDRSNGPSGQPGRGGSGNDEGNRSRRYRPY 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0082 480 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN Q 2 478 - -
Ssu4g0082 480 MobiDBLite consensus disorder prediction 439 480 - -
Ssu4g0082 480 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 281 358 IPR000504 GO:0003723
Ssu4g0082 480 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 186 268 IPR000504 GO:0003723
Ssu4g0082 480 MobiDBLite consensus disorder prediction 1 48 - -
Ssu4g0082 480 CDD RRM3_hnRNPR_like 280 358 - -
Ssu4g0082 480 ProSitePatterns EF-hand calcium-binding domain. 40 52 IPR018247 -
Ssu4g0082 480 Gene3D - 187 267 IPR012677 -
Ssu4g0082 480 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 184 IPR000504 GO:0003723
Ssu4g0082 480 SUPERFAMILY RNA-binding domain, RBD 103 271 IPR035979 GO:0003676
Ssu4g0082 480 CDD RRM_SF 108 180 - -
Ssu4g0082 480 Gene3D - 268 390 IPR012677 -
Ssu4g0082 480 Gene3D - 7 186 IPR012677 -
Ssu4g0082 480 PANTHER GEO13361P1-RELATED 2 478 - -
Ssu4g0082 480 SUPERFAMILY RNA-binding domain, RBD 274 372 IPR035979 GO:0003676
Ssu4g0082 480 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 188 254 IPR000504 GO:0003723
Ssu4g0082 480 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 178 IPR000504 GO:0003723
Ssu4g0082 480 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 283 351 IPR000504 GO:0003723
Ssu4g0082 480 MobiDBLite consensus disorder prediction 8 48 - -
Ssu4g0082 480 SMART rrm1_1 187 264 IPR000504 GO:0003723
Ssu4g0082 480 SMART rrm1_1 282 354 IPR000504 GO:0003723
Ssu4g0082 480 SMART rrm1_1 107 180 IPR000504 GO:0003723
Ssu4g0082 480 SMART rrm2_1 107 180 IPR003954 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0082 Ssu-Chr4 1372398 1377434 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0082 108 434 Eukaryotic Initiation Factors Gene Family AT1G71770 26.178 1.33e-18 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0082 K13161 - gmx:100790907 862.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0082 4 1372398 1377434 Ssu4g0082 4 1372398 1377434 ECH