Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0074 ATGCCGGAGAACATGAGCATATCTGTGAATGGACAATCACAAGTCCCTCCAGGCTTCCGGTTTCATCCAACCGAAGAGGAGCTGTTGCAGTACTATTTAAGGAAGAAGGTATCCTACGAGAAGATCGACCTCGATGTGATTCGCGACGTTGATCTCAACAAGCTCGAGCCATGGGACATACAagAGGAGTGCAAAATAGGAACCACCCCACAAAACGATTGGTACTTCTTCAGCCACAAAGACAAGAAGTATCCCACGGGAACCCGTACCAACCGCGCCACATCGGTTGGGTTCTGGAAGGCCACCGGGCGCGACAAGTTCATACATAGCAACGGCAAGAGGATTGGAATGAGAAAAACTTTGGTTTTCTACAAAGGCCGTGCCCCCAACGGCCAAAAGTCCGATTGGATCATGCATGAATACAGGCTAGACGACAACACCACCACCGAGACcaatattGTGTCCAATGCGATGGGAGACACGGCCCAGGAAGAAGGGTGGGTGGTGTGCAGAATATTCAAGAAGAAGAACCATCTCAAAAGCCTAGAAAGCCCTTCAGCCCCCTCGTCGGTCGCTAGAGAGACCAGAAGAAGCTGCCACTTGTTTGATTCTTGTGAGGAGGGAGCCTTGGAACAAGTACTTGAGCAAATGGGGAAGGGTTACAAAGAAGAGAATTACAACAGTGCAAGCTCTGCCACCGCCCATGACAAGTTCTCAAAACTCCCAAGCCTAGACAGCCCAAAATACATAACCGCGAACAAGGAcaacaaacaaaacaatgacaataataatggGTACCATCCCGTTATTCCCGTAGAGATGGTAACAGAAAGCGAGGGGTACTTATTCACAATGGGGGCATCATCATCTTCAATGGTGATAGGAGGAGGGTCTAGTGGCCTCACCAGCTGGGAAACCCTCGATCGGCTGGTGGCATCACAACTGAATGGCCAAAGCGAGGTATCTAGGCAATTGGGTTGTTTCAGTAGTGACCCCACCATGGGATATTATTGCAGTGGCGAGCATGATCTGCAATTCCCCACCTTCCTATCATCCTCAATTGCAACAACACCACACACCATGGCTGCTACTCCCATGACACAGGATTACAACAGCGACATTGACCTCTGGAACTTCGTCCGATCCACAACTCCGGAACCACTGTACCACGTCTCCAACACTTCAAATGTAACActgtaa 1200 0.4825 MPENMSISVNGQSQVPPGFRFHPTEEELLQYYLRKKVSYEKIDLDVIRDVDLNKLEPWDIQEECKIGTTPQNDWYFFSHKDKKYPTGTRTNRATSVGFWKATGRDKFIHSNGKRIGMRKTLVFYKGRAPNGQKSDWIMHEYRLDDNTTTETNIVSNAMGDTAQEEGWVVCRIFKKKNHLKSLESPSAPSSVARETRRSCHLFDSCEEGALEQVLEQMGKGYKEENYNSASSATAHDKFSKLPSLDSPKYITANKDNKQNNDNNNGYHPVIPVEMVTESEGYLFTMGASSSSMVIGGGSSGLTSWETLDRLVASQLNGQSEVSRQLGCFSSDPTMGYYCSGEHDLQFPTFLSSSIATTPHTMAATPMTQDYNSDIDLWNFVRSTTPEPLYHVSNTSNVTL 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0074 399 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 8 329 - -
Ssu4g0074 399 Pfam No apical meristem (NAM) protein 16 143 IPR003441 GO:0003677|GO:0006355
Ssu4g0074 399 PANTHER NAC DOMAIN-CONTAINING PROTEIN 12 8 329 - -
Ssu4g0074 399 SUPERFAMILY NAC domain 9 175 IPR036093 GO:0003677|GO:0006355
Ssu4g0074 399 Gene3D NAC domain 24 180 IPR036093 GO:0003677|GO:0006355
Ssu4g0074 399 ProSiteProfiles NAC domain profile. 15 175 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0074 Ssu-Chr4 1268954 1270410 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0074 1 395 NAC Transcription Factor Family AT2G46770 52.463 9.19e-130 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu4g0074 NAM 3.4e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0074 - - aprc:113863517 564.303