Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0068 ATGGCAGCTAATGCTACTCTTTCTCTCGCCTTCACTTCTTCCTCGTTACCGAAGCACAAGCCCCAATTCGGAGGTGCTCCGAAACGGTTCGCTTCCTGTTCTGCGGgcccttcttctttctcttcttcttcttctttgtgtCTTGTCGCGGGGCGCAGCTCCAAGGCCAGGGCTTTCACCGCCTCGTCGGCGGCGGCGGTTGATGAAGAAACGGTGGTTGACGGGGGAGAACACGTGGAGGAAGAAACGGGGAAGCAGGCAAGAGCAACCGAAGTGTACGTGTGCAACCTTCCGAGAAGCTGTGACACAGAACAGCTACTTCATATGTTCAACCCTCACGGAACCGTTCTGTCTGCCGAGGTTTGCCGGAGTGCGGAGACCGGTGAAAGTAGAGGGAGTGCTTTTGTCACAATGGCATCTATTAACTCGGCAAAAAATGCAATTGCTGCATTGGATGGATCGGATGTTGGTGGGCGTGAAATGCGGGTTAGATTTTCTGCTGAGATGAATCCTAGGAGGAGGAATCTTGATACAATGAACTCATCACCTAAGAGAGTTATATACTATGAAGGTCCTCATAAGTTGTATGTTGGGAATCTTTCCAGGGCTGCTAGGCCTGATGACTTGAGACAACTTTTTGGTAGATTTGGTAATGTGGCTAGTGTAAGGGTGTTGCAAGATTTGAGACAAGGGAAACGCAGGGTCTATGCATTTGTCTCTTATCTTTCAAAGAGAGAACGTGATGCAGCAATGTCCCTCCATGGAACAGTAAAATCTGCCTCTGCCACTTTCCATTGTTGTGCTTCTTGTTTCATTTGCTTATGTCTGATACCTAGTCTGGTCTTTCTTTCAGGAATTTTGTGGTCGTACGCTAGTGATTAG 882 0.4683 MAANATLSLAFTSSSLPKHKPQFGGAPKRFASCSAGPSSFSSSSSLCLVAGRSSKARAFTASSAAAVDEETVVDGGEHVEEETGKQARATEVYVCNLPRSCDTEQLLHMFNPHGTVLSAEVCRSAETGESRGSAFVTMASINSAKNAIAALDGSDVGGREMRVRFSAEMNPRRRNLDTMNSSPKRVIYYEGPHKLYVGNLSRAARPDDLRQLFGRFGNVASVRVLQDLRQGKRRVYAFVSYLSKRERDAAMSLHGTVKSASATFHCCASCFICLCLIPSLVFLSGILWSYASD 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0068 293 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 52 258 - -
Ssu4g0068 293 PANTHER OS02G0815200 PROTEIN 52 258 - -
Ssu4g0068 293 CDD RRM_SF 195 257 - -
Ssu4g0068 293 SUPERFAMILY RNA-binding domain, RBD 190 256 IPR035979 GO:0003676
Ssu4g0068 293 Gene3D - 50 178 IPR012677 -
Ssu4g0068 293 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 193 256 IPR000504 GO:0003723
Ssu4g0068 293 Gene3D - 189 264 IPR012677 -
Ssu4g0068 293 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 90 168 IPR000504 GO:0003723
Ssu4g0068 293 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 195 256 IPR000504 GO:0003723
Ssu4g0068 293 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 92 162 IPR000504 GO:0003723
Ssu4g0068 293 SUPERFAMILY RNA-binding domain, RBD 90 183 IPR035979 GO:0003676
Ssu4g0068 293 SMART rrm1_1 91 164 IPR000504 GO:0003723
Ssu4g0068 293 SMART rrm1_1 194 267 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0068 Ssu-Chr4 1175177 1177001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0068 92 264 Eukaryotic Initiation Factors Gene Family AT2G23350 25.287 9.43e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0068 - - gsj:114400287 332.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0068 4 1175177 1177001 Ssu4g0068 4 1175177 1177001 ECH