Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Ssu4g0068 | ATGGCAGCTAATGCTACTCTTTCTCTCGCCTTCACTTCTTCCTCGTTACCGAAGCACAAGCCCCAATTCGGAGGTGCTCCGAAACGGTTCGCTTCCTGTTCTGCGGgcccttcttctttctcttcttcttcttctttgtgtCTTGTCGCGGGGCGCAGCTCCAAGGCCAGGGCTTTCACCGCCTCGTCGGCGGCGGCGGTTGATGAAGAAACGGTGGTTGACGGGGGAGAACACGTGGAGGAAGAAACGGGGAAGCAGGCAAGAGCAACCGAAGTGTACGTGTGCAACCTTCCGAGAAGCTGTGACACAGAACAGCTACTTCATATGTTCAACCCTCACGGAACCGTTCTGTCTGCCGAGGTTTGCCGGAGTGCGGAGACCGGTGAAAGTAGAGGGAGTGCTTTTGTCACAATGGCATCTATTAACTCGGCAAAAAATGCAATTGCTGCATTGGATGGATCGGATGTTGGTGGGCGTGAAATGCGGGTTAGATTTTCTGCTGAGATGAATCCTAGGAGGAGGAATCTTGATACAATGAACTCATCACCTAAGAGAGTTATATACTATGAAGGTCCTCATAAGTTGTATGTTGGGAATCTTTCCAGGGCTGCTAGGCCTGATGACTTGAGACAACTTTTTGGTAGATTTGGTAATGTGGCTAGTGTAAGGGTGTTGCAAGATTTGAGACAAGGGAAACGCAGGGTCTATGCATTTGTCTCTTATCTTTCAAAGAGAGAACGTGATGCAGCAATGTCCCTCCATGGAACAGTAAAATCTGCCTCTGCCACTTTCCATTGTTGTGCTTCTTGTTTCATTTGCTTATGTCTGATACCTAGTCTGGTCTTTCTTTCAGGAATTTTGTGGTCGTACGCTAGTGATTAG | 882 | 0.4683 | MAANATLSLAFTSSSLPKHKPQFGGAPKRFASCSAGPSSFSSSSSLCLVAGRSSKARAFTASSAAAVDEETVVDGGEHVEEETGKQARATEVYVCNLPRSCDTEQLLHMFNPHGTVLSAEVCRSAETGESRGSAFVTMASINSAKNAIAALDGSDVGGREMRVRFSAEMNPRRRNLDTMNSSPKRVIYYEGPHKLYVGNLSRAARPDDLRQLFGRFGNVASVRVLQDLRQGKRRVYAFVSYLSKRERDAAMSLHGTVKSASATFHCCASCFICLCLIPSLVFLSGILWSYASD | 293 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Ssu4g0068 | 293 | PANTHER | RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN | 52 | 258 | - | - | |
Ssu4g0068 | 293 | PANTHER | OS02G0815200 PROTEIN | 52 | 258 | - | - | |
Ssu4g0068 | 293 | CDD | RRM_SF | 195 | 257 | - | - | |
Ssu4g0068 | 293 | SUPERFAMILY | RNA-binding domain, RBD | 190 | 256 | IPR035979 | GO:0003676 | |
Ssu4g0068 | 293 | Gene3D | - | 50 | 178 | IPR012677 | - | |
Ssu4g0068 | 293 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 193 | 256 | IPR000504 | GO:0003723 | |
Ssu4g0068 | 293 | Gene3D | - | 189 | 264 | IPR012677 | - | |
Ssu4g0068 | 293 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 90 | 168 | IPR000504 | GO:0003723 | |
Ssu4g0068 | 293 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 195 | 256 | IPR000504 | GO:0003723 | |
Ssu4g0068 | 293 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 92 | 162 | IPR000504 | GO:0003723 | |
Ssu4g0068 | 293 | SUPERFAMILY | RNA-binding domain, RBD | 90 | 183 | IPR035979 | GO:0003676 | |
Ssu4g0068 | 293 | SMART | rrm1_1 | 91 | 164 | IPR000504 | GO:0003723 | |
Ssu4g0068 | 293 | SMART | rrm1_1 | 194 | 267 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Ssu4g0068 | Ssu-Chr4 | 1175177 | 1177001 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Ssu4g0068 | 92 | 264 | Eukaryotic Initiation Factors Gene Family | AT2G23350 | 25.287 | 9.43e-08 | 51.2 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Ssu4g0068 | - | - | gsj:114400287 | 332.413 |