Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0066 ATGGGGGAAGTGGCGGGTGACAAAGGTGTGATGCAGACGCAGGGGGAGCAGAGCAACAATGCTTCCGCGGTTCGGTGGGAACGGTGTCTGCCTCGGATGGTGCTTCGGGTGTTGCTTGTCGAAGCTGATGATTCTACTCGACAGATCATTACTGCACTTCTCCGTAAATGCAGTTACAaagTTGCCGCAGTTCGTGATGGCTTAAAGGCATGGGATGCATTGAAGAACAAAGCATCTGACATAGATCTCATATTAACAGAAGTAGATTTGCCATCAATATCTGGATTTTCACTTCTTACCTTAATCATGGAGCATGACATTTGCAAAAACATTCCCGTCATAATGATGTCTTCTCATGATTCAGTTAGCATGGTGTTCAACTGCATGTTAAAAGGTGCAGCTGATTTTCTTATAAAACCTGTTCGCAAGAATGAGCTAAGAAACTTGTGGCAGCATGTATGGAGAAGGCATGCTaTTAGCAGGTCTCCTCAAAATTTAACACTGCCACAGATTCAACTTGGAGTTGCTGCAGAAAACCATGCTGCAAGCAATGATTCTAGTGGTTCTGTGGCttctacaccaaaaaataatgaatgcaGCGAGAAAACAAGTGAGGCTCAAGATATATCGCAACTGAAGAGCTCTTCAAATTTGAGCAATATTGACACAGTGAACCATGAAAACTCTACCAAATGTGAAAGGGAATCAGATAAGCTTAATGATGAAGCTGGAGagaaatcaatatatatatcagaAGCTGCAAGGTGCAACAAAACTTTTAAACCAACTGGTTTAAGGCTAGGTCAAGGCTATCGTTGTTGTGAAATGAAAAATCAAGATGAAGTTCTAAGAATAGAGTTGAGCAAAGCCGATCCTCAGATTAATACAGATATTCATGGATGCAGTGATGAACTGGTAGATCCTTCTACTGGGGCTATCGACTTGATTGCTACGTTCAAGAATCTTCCAAAGAGCACTGATGAAAAATGTAGTTTCAGTAGTGGTAACACTGCTGAGTTTGATTTTGATACACAATTGGaactttctttaaaaagagATTTTCCTGGCAACTCATGTCAAGCTGCATCTGAGGAAAGGCAAATATTGAATCATTCAAATGCTTCTGCCTTTTCTTGGTATAGTAGTAGTAAGTTGTTGCAGCCCCTTTTTCCAACACCATCAACTATCTCTGCTAAATTAACAAATGCCAGTCGGAATTCTCATGAATCCCATAAATTATCTGAAAATGCCTATACTTCTCATCAATATGGtggaaaaaatcaaaatcaggAGAAAATCACCACTCTGGTCATTGGTCAGTCTGGTCAAGTTGATCCAAAATTAGCAAACAGTCAACTTGGATCGTTTCCTGCTACTGGGGTTACTTCTGATCACAAGTCTTCGGGAAGTGATAATGTTTTCCCTTCTATGCTTTATGTACAATCAGGTGTCAATCCCATATGGACTTCAAAATCAGTGTGCCAGAAAGAGAGTTCTCCATTTCCCACAAGTACTTCGTCCCAGTCCAATCCTCAAAGTCACAACTCAGAACGTCATCACTGGTCGGACGATGCAACCCATGCTTCTGATCAAAATGTAAATGACCAAAGCAATTTGGATTGTGAGACACATGACTATCCTGCTACTGGTCAGAGTGCTGGTACTAGTTTTTACCATGGTACGGCAAATCATAATAGTAGTGGTGTATACAGAAGCATAGGCTGCAGAAGTGATGGAAATGCTACTTCAGCTAAGGTAGCCAAGGACAGCCATGAAAGTTTTATTGATAGTGGTCACCATAGTTATGATGGATTCATAGGGACAGATTCTCATCGCACCAGCCAACGAGAAGCAGCTCTAACAAAGTTTCGACTGAAGCGGAAAGACAGATGCTATGAGAAAAAGGTGCGATATCAAAGCCGGAAGAGATTGGCAGAGCAGCGCCCTCGGGTGAAAGGGCAGTTTGTTCGCCAAGTACACAATGATCATCCAGTAGCAGATGCGGGTGGGGATTCCTga 2019 0.4071 MGEVAGDKGVMQTQGEQSNNASAVRWERCLPRMVLRVLLVEADDSTRQIITALLRKCSYKVAAVRDGLKAWDALKNKASDIDLILTEVDLPSISGFSLLTLIMEHDICKNIPVIMMSSHDSVSMVFNCMLKGAADFLIKPVRKNELRNLWQHVWRRHAISRSPQNLTLPQIQLGVAAENHAASNDSSGSVASTPKNNECSEKTSEAQDISQLKSSSNLSNIDTVNHENSTKCERESDKLNDEAGEKSIYISEAARCNKTFKPTGLRLGQGYRCCEMKNQDEVLRIELSKADPQINTDIHGCSDELVDPSTGAIDLIATFKNLPKSTDEKCSFSSGNTAEFDFDTQLELSLKRDFPGNSCQAASEERQILNHSNASAFSWYSSSKLLQPLFPTPSTISAKLTNASRNSHESHKLSENAYTSHQYGGKNQNQEKITTLVIGQSGQVDPKLANSQLGSFPATGVTSDHKSSGSDNVFPSMLYVQSGVNPIWTSKSVCQKESSPFPTSTSSQSNPQSHNSERHHWSDDATHASDQNVNDQSNLDCETHDYPATGQSAGTSFYHGTANHNSSGVYRSIGCRSDGNATSAKVAKDSHESFIDSGHHSYDGFIGTDSHRTSQREAALTKFRLKRKDRCYEKKVRYQSRKRLAEQRPRVKGQFVRQVHNDHPVADAGGDS 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0066 672 Pfam CCT motif 616 658 IPR010402 GO:0005515
Ssu4g0066 672 MobiDBLite consensus disorder prediction 495 546 - -
Ssu4g0066 672 MobiDBLite consensus disorder prediction 642 672 - -
Ssu4g0066 672 MobiDBLite consensus disorder prediction 527 546 - -
Ssu4g0066 672 MobiDBLite consensus disorder prediction 406 427 - -
Ssu4g0066 672 Pfam Response regulator receiver domain 37 148 IPR001789 GO:0000160
Ssu4g0066 672 SMART REC_2 35 150 IPR001789 GO:0000160
Ssu4g0066 672 PANTHER TWO-COMPONENT RESPONSE REGULATOR 206 668 IPR045279 GO:0009736
Ssu4g0066 672 PANTHER PRR RESPONSE REGULATOR 206 668 - -
Ssu4g0066 672 MobiDBLite consensus disorder prediction 642 657 - -
Ssu4g0066 672 CDD psREC_PRR 37 140 - -
Ssu4g0066 672 ProSiteProfiles CCT domain profile. 616 658 IPR010402 GO:0005515
Ssu4g0066 672 PANTHER PRR RESPONSE REGULATOR 24 203 - -
Ssu4g0066 672 MobiDBLite consensus disorder prediction 448 469 - -
Ssu4g0066 672 MobiDBLite consensus disorder prediction 495 515 - -
Ssu4g0066 672 Gene3D - 33 252 - -
Ssu4g0066 672 PANTHER TWO-COMPONENT RESPONSE REGULATOR 24 203 IPR045279 GO:0009736
Ssu4g0066 672 MobiDBLite consensus disorder prediction 182 239 - -
Ssu4g0066 672 SUPERFAMILY CheY-like 35 166 IPR011006 -
Ssu4g0066 672 ProSiteProfiles Response regulatory domain profile. 36 154 IPR001789 GO:0000160
Ssu4g0066 672 MobiDBLite consensus disorder prediction 182 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0066 Ssu-Chr4 1151217 1155614 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0066 615 660 Response Regulator Gene Family AT5G24470 89.130 1.53e-20 94.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Ssu4g0066 Response_reg 1.4e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0066 K12130 - gmx:100779346 1134.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0066 4 1151217 1155614 Ssu4g0066 4 1151217 1155614 ECH
Ssu4g3028 4 77370104 77374900 Ssu4g0066 4 1151217 1155614 ECH