Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0063 ATGGAATTTTTATTGTTAGTAGTTGGTCCAGTGGTTAACATCATCATGGCTTTGTTATTGGGTCATGATCATGGTCATGGCCATGGACATAGTGATCATGGCCACAGGCATGAATTTCAAGCGTCTactcatcatcaccatcatggTGTAAAGCATCCAAAAGATTGCCACCATCATACTCGTGAAGATCACGTGCACCATCAAACTCCTGAGGAAGAGGTGGTTGCCATGCCACTTCTTGGTGGATctaaagagaaggaaaagagatGGAACACAGATGTACAAGGGGCATATCTCCATGTACTTGGGGACTCTGTCCAGAGTGTTGGGGTAGTGATTGGGGGAGCCATCATATGGCATAATCCTGAGTGGCAAATAGTTGATTTAATTTGCACATTAGTCTTTTCAGTGGTTGTTTTGGGGACAACCATCAATATGCTGCGAAGCATAGTGGAAGTCCTTATGGAGAGCACACCGCGTGAGATAGAGGCAGCTAAGCTTGAAAGGGAGTTGTTGGACATGGAAGAAGTGATGGCGGTTCATGAGTTGCATATATGGGCCATTACAGTTGGGAAGGTTTTACTGGCTTGTCATGTTAAAATCAGACCAGAAGTATGCAGACACTCTGCTGGAAAAAGTTATCCACTATATCAGAAGGGTTTATAA 666 0.4144 MEFLLLVVGPVVNIIMALLLGHDHGHGHGHSDHGHRHEFQASTHHHHHGVKHPKDCHHHTREDHVHHQTPEEEVVAMPLLGGSKEKEKRWNTDVQGAYLHVLGDSVQSVGVVIGGAIIWHNPEWQIVDLICTLVFSVVVLGTTINMLRSIVEVLMESTPREIEAAKLERELLDMEEVMAVHELHIWAITVGKVLLACHVKIRPEVCRHSAGKSYPLYQKGL 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0063 221 PANTHER CATION EFFLUX PROTEIN/ ZINC TRANSPORTER 3 205 - -
Ssu4g0063 221 MobiDBLite consensus disorder prediction 41 70 - -
Ssu4g0063 221 Coils Coil 164 184 - -
Ssu4g0063 221 MobiDBLite consensus disorder prediction 41 55 - -
Ssu4g0063 221 Gene3D Cation efflux protein transmembrane domain 1 154 IPR027469 -
Ssu4g0063 221 PANTHER METAL TOLERANCE PROTEIN A1 3 205 - -
Ssu4g0063 221 Pfam Cation efflux family 5 155 IPR002524 GO:0006812|GO:0008324|GO:0016021|GO:0055085
Ssu4g0063 221 SUPERFAMILY Cation efflux protein transmembrane domain-like 4 156 IPR027469 -
Ssu4g0063 221 TIGRFAM CDF: cation diffusion facilitator family transporter 4 205 IPR002524 GO:0006812|GO:0008324|GO:0016021|GO:0055085
Ssu4g0063 221 MobiDBLite consensus disorder prediction 56 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0063 Ssu-Chr4 1136971 1137636 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0063 82 204 Inorganic Solute Cotransporters AT2G46800 81.301 7.95e-67 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0063 K14689 - gmx:100790458 260.766