Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0062 ATGGAGAGGTTTCAAGGACCCCTCAGTTCCTGTTTCTTTGGTGAGTATTTGGATGTAAATTGTTTGGAGCAAGGTTTGGTTGGTGCAGAGTGCTTGAAACTTGAGGAGAATGAACAATCTCTGGCATCAAGTTTAGAGGATAACATGCCATTCCTTCAGATGCTTCAGAGTGTAGAATCCCCACAATTTATCCCTTTCAAAGAACCAAGCTTCGAGACAATGAAGAAGCCATGGGAAGGGATGAGATCGGAGACTCAAAGTCAAGCGGTGGAACTTGAGAGCTGTGTCACACATGACCTGGTGGAAACGCAGTCACCACTGAAGTCCGAAAGCAATGAACTTCAACATCTACATTCAGCTTGGGGTGTTGAGAAAGTGAATTACGAGTGCAATAAAGCTGAAGATTGTAGCATGGATGCTGTAGTAGATTCTAATGCTGCTTGGCATAGAGGGTGTAAGACTAGAACTCAGGTTGGTACAAGGGAACGAAGAAAGAGAACGAGAACGAGGCAAACAAAGAACAAGGAAGACATTGAGAACCAGCGCATGACTCACATTGCTGTGGAACGCAACAGGCGACGCCAAATGAATGACCATCTCAGTGTGCTCAAATCCCTCATGCCCCCTTCCTATGTTCAAATGAGTGACCATGCGTCAATCATTGGAGGTGCAATAGACTTTGTGAAGGAATTGGAGCAGTTACTTCAATCCCTGGAGGCACAAAAGAGGGTGAGAAAGAACGAAGAGGTTGGTTCCAGCGGGTTGTTTGAACATGGTTATGAAAAAGTAAACTGTGGGGATGAGGTTAAGGCAGAAAAGAATTCAGAGGCTGGAGCTGTAGAGGTCACTGTGATTCAAACCCATGTGAACTTGAAAATTCAGTGCCTAAGGAGACCTGGAAAATTGATAAAAGCAATTGTTGCCTTGGAGAACCTAAGGCTAACTATTCTGCATCTCAACATCACATCCACAGAGGCTACGGTACTCTACTCTTTCAATCTCAAGATTGAAGAAGACAGTAAAGTAGTCTCAGCAAGTGAAATTGCAGAAGCAGTTGATCATATATTTAGATCCATTAATGACAGCTAA 1089 0.4371 MERFQGPLSSCFFGEYLDVNCLEQGLVGAECLKLEENEQSLASSLEDNMPFLQMLQSVESPQFIPFKEPSFETMKKPWEGMRSETQSQAVELESCVTHDLVETQSPLKSESNELQHLHSAWGVEKVNYECNKAEDCSMDAVVDSNAAWHRGCKTRTQVGTRERRKRTRTRQTKNKEDIENQRMTHIAVERNRRRQMNDHLSVLKSLMPPSYVQMSDHASIIGGAIDFVKELEQLLQSLEAQKRVRKNEEVGSSGLFEHGYEKVNCGDEVKAEKNSEAGAVEVTVIQTHVNLKIQCLRRPGKLIKAIVALENLRLTILHLNITSTEATVLYSFNLKIEEDSKVVSASEIAEAVDHIFRSINDS 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0062 362 PANTHER MAX DIMERIZATION, MAD 25 361 - -
Ssu4g0062 362 PANTHER TRANSCRIPTION FACTOR BHLH70 25 361 - -
Ssu4g0062 362 Coils Coil 228 248 - -
Ssu4g0062 362 Gene3D - 169 248 IPR036638 GO:0046983
Ssu4g0062 362 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 180 246 IPR036638 GO:0046983
Ssu4g0062 362 Pfam Helix-loop-helix DNA-binding domain 181 232 IPR011598 GO:0046983
Ssu4g0062 362 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 180 231 IPR011598 GO:0046983
Ssu4g0062 362 CDD bHLH_AtFAMA_like 183 253 - -
Ssu4g0062 362 SMART finulus 186 237 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0062 Ssu-Chr4 1129152 1131797 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0062 54 336 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G46810 45.578 1.36e-64 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu4g0062 HLH 3.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0062 - - aprc:113862094 451.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0062 4 1129152 1131797 Ssu4g0062 4 1129152 1131797 ECH