Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0060 ATGGCTCCTTCGTTAGAATCGGACACAAAACTTGCCAATGGGAGAGGCGAGCATGTTACACCAGAAGAAGATGAGCTGGCGTTTTGCATGGAAAAGATGGTTTCGTTTGTGCTTCCAATGGCTTTGCGGACCTCGTTTGAGCTGGGCGTGTTTGACATCCTAGTCAAAGCCGGTGAAGGTGCCAAGCTCTCTGCCAAAGACATTGCACTTCAGATTGGGACCAACAACCCCGAAGCTCCCGCAATGCTCGATCGTCTTCTTAGCCTTTTGGTTAGTCACTCTTTGCTATCTTGCTCTGTTCCtgaacaacaacaaagccttgGATTGCCTCAGAGGTTCTACAGCCTCACTCGTGGATCCAAATACTTTGTTGCTGATCCTGATGGTATATCATTGGGATTCGCGGCGGTATTGTTTCTGGACCAGGTCTTCTATAAAAGCTGGAGCGAACTGAAAGGAGCAATCCTAGAAGGGGGTGTAGCATTCGACAGGGCTCATGGCATGCATGCCTTCGAATATCCAAGCGTGGATCCCAGATTCAATGAGGTTTTCAACAAAGGCATGATAGGCATGACCACTGTAATTATGAAGAGGGTTCTTGAATTATACAAGGGTTTGGAGCACGTCACTAAGCTGGTGGACGTTGGTGGAGGTCTAGGGGTCAATCTCAAAATGATCACATCCAAATACCCTCATATCCAGGGTATTAATTTTGACTTGCCTCATGTCATAGAACATGCCCCCGACTATGCagGTGTGGAGCATGTGGGAGGAGATATGTTTGAGAGCGTTCCTTCTGGAGATGCCATTTTTATGAAGTGGATACTTCATGATTGGAGTGATCAGCACTGCTTGAAGCTCTTGAAGAATTGCTACAAAGCTACTCCAGACGATGGAAAGGTTATTGTGGTGGACTCAATTTTGTCCTTTGTGCCTGAGACAACTGCTACCGCGAAGGGTGCTTTGGGATCTGACCTCATAATGATGACTCAAAACCCAGGAGGGAAAGAGCGGACCCGGCACGAATTCATGGAATTAGCAAAAGGATCCGGATTTAGTGGGGTCAGATTCATATGCTGTGTATGTGGCCACTGGGTTATGGAGTTCTATAAGTAG 1116 0.4624 MAPSLESDTKLANGRGEHVTPEEDELAFCMEKMVSFVLPMALRTSFELGVFDILVKAGEGAKLSAKDIALQIGTNNPEAPAMLDRLLSLLVSHSLLSCSVPEQQQSLGLPQRFYSLTRGSKYFVADPDGISLGFAAVLFLDQVFYKSWSELKGAILEGGVAFDRAHGMHAFEYPSVDPRFNEVFNKGMIGMTTVIMKRVLELYKGLEHVTKLVDVGGGLGVNLKMITSKYPHIQGINFDLPHVIEHAPDYAGVEHVGGDMFESVPSGDAIFMKWILHDWSDQHCLKLLKNCYKATPDDGKVIVVDSILSFVPETTATAKGALGSDLIMMTQNPGGKERTRHEFMELAKGSGFSGVRFICCVCGHWVMEFYK 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0060 371 Gene3D - 11 123 IPR036388 -
Ssu4g0060 371 Gene3D Vaccinia Virus protein VP39 125 371 IPR029063 -
Ssu4g0060 371 PIRSF O-mtase 8 371 IPR016461 GO:0008168
Ssu4g0060 371 PANTHER O-METHYLTRANSFERASE 1 371 IPR016461 GO:0008168
Ssu4g0060 371 SUPERFAMILY "Winged helix" DNA-binding domain 23 126 IPR036390 -
Ssu4g0060 371 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 30 371 IPR016461 GO:0008168
Ssu4g0060 371 PANTHER CAFFEIC ACID O-METHYLTRANSFERASE 1 371 - -
Ssu4g0060 371 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 129 370 IPR029063 -
Ssu4g0060 371 Pfam Dimerisation domain 40 91 IPR012967 GO:0046983
Ssu4g0060 371 Pfam O-methyltransferase domain 148 353 IPR001077 GO:0008171
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0060 Ssu-Chr4 1103054 1105709 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0060 18 371 Monolignol Biosynthesis Gene Families AT5G54160 51.695 1.40e-130 377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0060 K13066 - gmx:100789402 491.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0060 4 1103054 1105709 Ssu4g0060 4 1103054 1105709 ECH