Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0059 ATGGCCAGCCTTCCAGATTCGAATGTTTATGGCaaagagaagatgaaagaaGCGCAAGAATTACAAGATGAAGCAAGCTTCTCGTATGCTATGCAGATTGGCAACTCCATTGTGCTTTCCATGACACTGCAATCGGCGACGGAGCTGGGCGTATTCGACGTGTTGCAAAAAGCTGGTGAAGGTGCTAAGCTCTCTGCCAAGGAGATAGCATCGCAGCTTTCTTGCAACTACCCAGAAGCACCCTCAATTCTAGATCGTGTTCTCGCCCTTCTTGCCTCTCACAACATCCTTAACTGTTCAGTCATTCCCGACAACCAAAACCTTGGATCCTTTCACAGGCTCTACACCATCACCCCTGTCGCCACATTCTTTGCTCGCAATTCTGATGGAGTTTCATTGGGACCCTTGATGGCCTTGGTCCAAGACAAGATCTTCCTAGACAGCTGGTCCCAGCTGAAAGATGCTATTCGGGAAGGGGGTATTCCATTCAACAGGGTTCATGGCACTCATGCTTTTGAGTATCCACGCCTGGACTCAAGGTTCAATCAAGTTTTTAATACTGCAATGATCAACCACACCACTTTATTGATGAAGAAGGTTCTGGAATGCTACAAAGGTTTTGAGGACATAAAAAGGCTTGTGGATGTTGGTGGTGGTTTTGGGATTAACATTAACTTGATCACTTCCAAATACCCTCATACCCAGGGTATCAATTTCGACTTGCCTCATGTCATACAACATGCTCCTTCCATTCCTGGAGTGGAACACGTTGGTGGAGATATGTTTGAAAGTGTGCCTAAAGGAGACGCCATCTTTATGAAGTGGATACTTCATGATTGGAGTGATGAGTACTGTTTGAAGCTGCTGAATAACTGCTATGATGCAATTCCTGATGGTGGAAAGGTGATTGTTGTGGAGGCAGTTCTTCCAATTATACCAGAGACTAATGCTGCTTGGAAGGCCGTTTCCCAATTGGATGTTTTGATGATGACTCAAAACCCCGGAGGGAAAGAGCGAACAGAACAAGAATTCCTGGAATTGGCAACTGCAGCTGGATTTAGGGGCATCAGATATGAATGCTATGTTCGTAACTTCTGGGTTATGGAGTTCTTCAAGTAG 1119 0.4486 MASLPDSNVYGKEKMKEAQELQDEASFSYAMQIGNSIVLSMTLQSATELGVFDVLQKAGEGAKLSAKEIASQLSCNYPEAPSILDRVLALLASHNILNCSVIPDNQNLGSFHRLYTITPVATFFARNSDGVSLGPLMALVQDKIFLDSWSQLKDAIREGGIPFNRVHGTHAFEYPRLDSRFNQVFNTAMINHTTLLMKKVLECYKGFEDIKRLVDVGGGFGININLITSKYPHTQGINFDLPHVIQHAPSIPGVEHVGGDMFESVPKGDAIFMKWILHDWSDEYCLKLLNNCYDAIPDGGKVIVVEAVLPIIPETNAAWKAVSQLDVLMMTQNPGGKERTEQEFLELATAAGFRGIRYECYVRNFWVMEFFK 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0059 372 Gene3D Vaccinia Virus protein VP39 125 372 IPR029063 -
Ssu4g0059 372 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 31 372 IPR016461 GO:0008168
Ssu4g0059 372 Pfam Dimerisation domain 41 92 IPR012967 GO:0046983
Ssu4g0059 372 Gene3D - 7 124 IPR036388 -
Ssu4g0059 372 PANTHER O-METHYLTRANSFERASE 7 372 IPR016461 GO:0008168
Ssu4g0059 372 PIRSF O-mtase 8 372 IPR016461 GO:0008168
Ssu4g0059 372 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 129 370 IPR029063 -
Ssu4g0059 372 Pfam O-methyltransferase domain 149 354 IPR001077 GO:0008171
Ssu4g0059 372 PANTHER CAFFEIC ACID O-METHYLTRANSFERASE 7 372 - -
Ssu4g0059 372 SUPERFAMILY "Winged helix" DNA-binding domain 23 127 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0059 Ssu-Chr4 1067500 1086871 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0059 14 372 Monolignol Biosynthesis Gene Families AT5G54160 51.524 1.57e-136 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0059 K13066 - gmx:100803633 637.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0059 4 1067500 1086871 Ssu4g0059 4 1067500 1086871 ECH