Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0055 ATGGACGCTTACTCATCTGGAGAAGAAGTGGTTATTAAGACAAGAAAACCATATACTATCACAAAGCAAAGAGAACGATGGACAGAGGAGGAACATAATAGATTTCTAGAAGCCTTGAAGCTATACGGGCGAGCATGGCAGCGCATAGAAGAGCATATAGGAACAAAGACTGCTGTGCAAATCAGAAGCCATGctcagaaatttttttcaaagTTGGAGAAAGAGGCCTTTGTAAAGGGTGTTCCAATAGGACAAGCTCTTGATATAGACATCCCCCCTCCACGGCCAAAAAGAAAACCAAGCAATCCTTATCCCCGGAAGATCAATGTTGGTGCCCCAACAGCAAAGCATGGAAAGTTTCTCATTTCAATTGCATCTTCACATGGTAAACAAGCACTGGACTTGGAGAAAGAACCACTTCCAGAgAAGAATAATGTCGACCTAAGGCCAACAactgtaaaagaaaataaggacgAAAGttgctcaaaaatatttaccaTTCTCCAGGAGGCACCCTGTTCATCTGTATCTTCCGCAAACAAGAATTCAACATCAATGTCAGTGCCACTGAGAAATTCATGTGCCTTGAGGGAGTTTATACCTTCAGTGAAAGGGATAATAACTCGAGATGAAACAAATGAATCTTTTGTTACGACTGATGAGCTTGAAAATCAGAAGTTGGAGATAGATGATGggaatcatacacaaaagacaAATGGCACTTGTAAAGTCTCTAAGTTGGAGAATTCTGGTGCTTCCAAATTGGTTCAAACTGAGAAAATAGATGATCTTAATTGTGAATTAACAATAGATGGGATGCAAGGCAATCAGAATTACCCAAGACATGTCCCTGTGCACATTGTTGATGGGAACCTTGGAACTAGCACTCAAAATCCATCCCCGGATATGGTGTTCCAGGACTCCGTATTTCAGCCAATAGGAGGGGTTAATGGGCAACCTAATCTTGTCACCAACTCTGCTACTTCAAACATAAGTGAAAGTCAGAATAACACAGCACGATCCTCTATTCATCAATCATTTCCTCCTTGTCCTCCCTTCACACAACATAATCAGGGTGATTACCAATCATTTCTTCACATGTCCTCTACATTTGCAAGTCTTATTGTCTCTACCTTGCTGCAAAACCCTGCATCCCATGCTGCAGCAAGTTTTGCTGCTACATTTTGGCCCTATGCAAATACAGAAACTTCAGCAGATTCTCCTGTGTGCTCTCCAGGCTTTCCATCTAGACAAATTGGATCACCTCCAAGTGTGGCAGCTATTGCAGCTGCTACAGTAGCTGCTGCAACTGCATGGTGGGCTTCTCATGGACTGCTTCCTTTGTGTGCTCCACTCCATACAGCTTTTGCCTGTCCTCCTGCATCAGCAACTGCAGTTCCATCAATTAATATTTGTGAATCACCACAAAAACAGAGCAAGGAGATATTAAACCACAAAATCCTCCTCTGCAAGAGCAGATACTGGATCCAGGACACTCGGAAGCTCTCCAAGCTCAAAATTCAGCTTCTAAGTCAACAGCTGTTTCTTCATCCGAATCTGAGCAGAGTGGAGATGCCAATTTAA 1584 0.4085 MDAYSSGEEVVIKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSKLEKEAFVKGVPIGQALDIDIPPPRPKRKPSNPYPRKINVGAPTAKHGKFLISIASSHGKQALDLEKEPLPEKNNVDLRPTTVKENKDESCSKIFTILQEAPCSSVSSANKNSTSMSVPLRNSCALREFIPSVKGIITRDETNESFVTTDELENQKLEIDDGNHTQKTNGTCKVSKLENSGASKLVQTEKIDDLNCELTIDGMQGNQNYPRHVPVHIVDGNLGTSTQNPSPDMVFQDSVFQPIGGVNGQPNLVTNSATSNISESQNNTARSSIHQSFPPCPPFTQHNQGDYQSFLHMSSTFASLIVSTLLQNPASHAAASFAATFWPYANTETSADSPVCSPGFPSRQIGSPPSVAAIAAATVAAATAWWASHGLLPLCAPLHTAFACPPASATAVPSINICESPQKQSKEILNHKILLCKSRYWIQDTRKLSKLKIQLLSQQLFLHPNLSRVEMPI 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0055 527 MobiDBLite consensus disorder prediction 332 352 - -
Ssu4g0055 527 SMART sant 23 71 IPR001005 -
Ssu4g0055 527 PANTHER SWI/SNF COMPLEX-RELATED 2 478 - -
Ssu4g0055 527 ProSiteProfiles Myb-like domain profile. 19 69 IPR001005 -
Ssu4g0055 527 Gene3D - 26 74 - -
Ssu4g0055 527 ProSiteProfiles SANT domain profile. 22 73 IPR017884 -
Ssu4g0055 527 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 73 IPR017930 -
Ssu4g0055 527 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 22 71 IPR006447 GO:0003677
Ssu4g0055 527 CDD SANT 26 69 IPR001005 -
Ssu4g0055 527 PANTHER PROTEIN LHY 2 478 - -
Ssu4g0055 527 SUPERFAMILY Homeodomain-like 18 74 IPR009057 -
Ssu4g0055 527 Pfam Myb-like DNA-binding domain 24 67 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0055 Ssu-Chr4 1014188 1027602 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Ssu4g0055 Myb_DNA-binding 1.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0055 K12133 - gmx:778086 791.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0055 4 1014188 1027602 Ssu4g0055 4 1014188 1027602 ECH