Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0053 ATGTCACATATTGTCCTCCTGACTTTTGTTGCTGTTCTTTTCGGGCTTCTTGTGTGCTTCCCATTTTCTTGTTCTCTGGAAGAGGAAGGAAAACTGCCACAAGCCCCTTTGCTTCCAAACTCTTGCAATGAAACATGTGGGGACCTACACGTTCCATTTCCATTCTATGTCAACACTTCTTGTGAGTCAATTTCGAGTGCCTTCCATCTCTCATGCTCAAATTCCTCTGCCCTTTTGCTCAGAATTGGGTCAGCGAGCTACACAGTGTTGGAATTCTTCCCAGATGGTGTGCTAGTGGACTTTCCAGGCTCATCATCCTGTCGCCAGTACAATGACTTGAACTCTTTTGGCAGAAGTTTTGCAGGGAAGGAGAACTTTGGAGTCTCGGTTGACAATGTTGTTGGCCTCTATGACTGTGAGGATTCTTCTCTGTGCAAAGCAGATTGTGAAACTATTGACTTGCCTGGTTGTGATGGAAGGGGTGGAGGCTCGCTTGCCTGCTGCTATCCACTCTCTGACCATACCATATGGCATGTTGGAGATGGGTTTTCAGTGTTTTCTCAGTTTGGATGCAGGGGGTTTTCTAGTTGGGCTGTTCTGCGAGGCTCAACTTGGGGAAAACGAGGGGTCAAGTTGGAATGGGCTCTTCCCGGGAACTCCTCTAGGGAAGTTTGTGCTACGAATGCAAACATGGCCAATGCTACAGCAATTAAAGGAGGCGTGAGATGTGTCTGTCAAAATGGATATGTTGGTGATGGTTTTGCTAATGGAGCTGGTTGTTTGCAGGCCTGCATAAAGGATGGAAAGGAAGCATATGGAAGTGACTGCTACATCAAAAGACATGATCAATGGAAATTTGTCATGATTGCTGGAATCATTGGCCCAGTTCTCATTGTTGCCTCCCTGGTTGcactattttatcttcttaaaagGCCAACAAAACCAGGGATGTTTGACACCGAGCAGGCTTACTATCAAAATATTACAATCCCCAAAGCTTGTAAAACTCGATTATTCAGCCTCCACGAGCTAGAGGAAGCCACGAAAAGTTTCGAAGAGGGTCAGAAACTTATGCATGGCAATAATGGGACAATTTTCGCTGGAGTTTTAGGGGATGGATCTCACATAGCTGTCCACAAGTTACAATGTGAGAAGAAGGACTTAATTCAAGTCCTGTCACAAATCGAGGTTCTATCTGCTATTGTGAATAGAAACATGGCACGCCTTCTTGGATGCTGTATCGAATCTGGCGACACCCTAGTAGTTTATGAGTATCCTTCCAATGGTACTCTGGAGGAACATTTACATCAAAGCAAAGGACAACAACTTCGTTTAGATTGGTATAGGAGATTGACTATTGCTGCAGAAACAGCTAGTATTCTTGCATTCTTACACTACGAGAACTCTCCTCCCATATTTCACCATAACCTTAAATCTGCCTGCATCTTCCTAGATGATGATTATTCTGTCAAGATTGCAGGATTTGGTCTGATCAACTCCGATTTTTACTATGGTTCTCACTTACATAAGAACTATGAAGGCTTTGGCATCTGCAAAAATGATGTTTACGACATGGGTGTGTTGCTTCTTGAGATTATCTCAGGCTCAAATCTCTTGGATTCACCAACTTTGGCCTTACAGCAAATAAGGGCTggaaaatttgaagaaatttttgacCCATTTCTTTGCTATCATGAACAACCTCATTATCGCCAAGAGCAAATGCAAATAATAGCAGATCTTGCAACAAGATGCCTGTTATTTGGTGTAGATGGAAGGCTAGGAATGATTGATGTTGTGAGGGAGTTAGTACACATGACTAAAGAAAGTCTTGATGGAGGAATTACGAAAGGACCTGCACTGGAGGAGACATTCTCAAATTCAAGCCTTCTTCAGATGATATCAATGTCTCCTGATTCTATGAATATCCCTtga 1935 0.4248 MSHIVLLTFVAVLFGLLVCFPFSCSLEEEGKLPQAPLLPNSCNETCGDLHVPFPFYVNTSCESISSAFHLSCSNSSALLLRIGSASYTVLEFFPDGVLVDFPGSSSCRQYNDLNSFGRSFAGKENFGVSVDNVVGLYDCEDSSLCKADCETIDLPGCDGRGGGSLACCYPLSDHTIWHVGDGFSVFSQFGCRGFSSWAVLRGSTWGKRGVKLEWALPGNSSREVCATNANMANATAIKGGVRCVCQNGYVGDGFANGAGCLQACIKDGKEAYGSDCYIKRHDQWKFVMIAGIIGPVLIVASLVALFYLLKRPTKPGMFDTEQAYYQNITIPKACKTRLFSLHELEEATKSFEEGQKLMHGNNGTIFAGVLGDGSHIAVHKLQCEKKDLIQVLSQIEVLSAIVNRNMARLLGCCIESGDTLVVYEYPSNGTLEEHLHQSKGQQLRLDWYRRLTIAAETASILAFLHYENSPPIFHHNLKSACIFLDDDYSVKIAGFGLINSDFYYGSHLHKNYEGFGICKNDVYDMGVLLLEIISGSNLLDSPTLALQQIRAGKFEEIFDPFLCYHEQPHYRQEQMQIIADLATRCLLFGVDGRLGMIDVVRELVHMTKESLDGGITKGPALEETFSNSSLLQMISMSPDSMNIP 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0053 644 PANTHER OS10G0351500 PROTEIN 51 639 - -
Ssu4g0053 644 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 51 639 IPR045274 GO:0007166
Ssu4g0053 644 SUPERFAMILY Protein kinase-like (PK-like) 334 603 IPR011009 -
Ssu4g0053 644 Pfam Protein tyrosine and serine/threonine kinase 353 500 IPR001245 GO:0004672|GO:0006468
Ssu4g0053 644 Pfam Wall-associated receptor kinase galacturonan-binding 42 92 IPR025287 GO:0030247
Ssu4g0053 644 ProSiteProfiles Protein kinase domain profile. 351 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g0053 644 Gene3D Transferase(Phosphotransferase) domain 1 427 613 - -
Ssu4g0053 644 Gene3D Phosphorylase Kinase; domain 1 318 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0053 Ssu-Chr4 970451 973130 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0053 42 603 Receptor kinase-like Gene Family AT2G23450 30.348 1.30e-61 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-3 Ssu4g0053 PK_Tyr_Ser-Thr 1.2e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0053 - - gmx:100810557 1174.84