Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0051 ATGGCAAGCGACACTAAACAGGAAAACAATGGAAAGCTTGATAAGAAGTCTGAGGAGGCTAAGGAGAGGGTTCCTGAGGAAAAAGCTAGACAATATCAGTTGGATGTTCTTGAGCaggcaaagaagaaaaatactatagctTTTCTTGAAACTGGAGCAGGGAAAACCTTAATTGCTGTTCTTCTCATTAAAAGTATACAGGAGAGTTTGCAgaagcaaaataagaaaatgctTGCAGTATTTTTAGTTCCAAAAGTTCCACTTGTTTACCAGCAAGCTGAAGTAATTCGTGAGCGGACTGGTTATCACGTGGGCCACTATTGCGGAGAAATGGGGCAAGATTTCTGGGATGCTCGAAGGTGGCAGCGTGAATTTGACAGCAAACATGTTTTAGTCATGACCGCTCAAATTCTTTTGAACATTTTGAGGCATAGCATAATAAAAATGGAAGCAATCAATCTCTTGATTCTGGATGAGTGCCACCATGCCGTGAAGAAACACCCATATTCACTGGTGATGTCTGAGTTCTACCATACAACAACCAAAGAGAGGAGGCCATCTGTATTTGGAATGACTGCTTCTCCTGTTAACTTGAAGGGTGTCTCCAGCCAAGTAGATTGTGCAATAAAAATTCGTAATCTTGAAAGTAAGCTAGATTCTATAGTTTGCACCATAAAAGATCGTAAGGAGCTGGAGAAACATGTGCCAATGCCCTCTGAAGTTGTGGTGGAGTATGATAAAGCTGCCAGTTTATGTTATCTACATGAGCAGATAAAGCAGATGGAGGTTGAAGTTGAAGAAGCTGCAAAATCTAGTTCAAGAAGAAGCAAATGGCAATTTATGGGAGCTAGAGATGCTGGAGCTAAGGAAGAGCTGCGCCAAGTATATGGTGTTTCTGAAAGAACAGAAAGCGATGGAGCTGCAAACCTAATTCAGAAGTTGAGAGCTGTTAATTATGCACTTGGTGAACTGGGACAATGGTGTGCATATAAGgTTGCACAATCCTTTTTAGCAGCTTTGCAAAATGATGAAAGGGCCAACTACCAACTTGATGTCAAGTTTCAGGAATCTTATCTGAGTAAAGTTGTCTCTCTTCTGAAATGCCAACTGTCAGAGGGTGCAGTTTCTGACAAAAATGCTGGTATTGATGACTCAGAGAATGGTGCAGCTCAAAGTGGGTCTGATCATGAAGAGATGGAAGAAGGAGAGCTTCTAGACAGTCATGTTGTCTCTGGCGGGGAGCATGTGGACGTCATTATAGGAGCTGCTGTGGCTGATGGCAAGGTGACCCCCAAGGTCCAGGCACTAATCAAAATACTTCTCAAATATCAGCATACAGAAGACTTCCGTGCAATCATCTTTGTTGAGCGTGTTGTGTCTGCATTAGTTCTGCCCAAGGTCTTTGCAGAGCTTCCATCTCTTAGTTTTGTGAAGTGTGCAAGCTTGATTGGTCACAATAACAGTCAGGAAATGCGGACCTATCAAATGCAGGATACAATTGCCAAGTTCCGTGATGGGCGGGTCACATTGTTAGTTGCCACTAGTGTTGCTGAAGAAGGACTTGATATCCGGCAATGCAATGTTGTTATTCGCTTTGACCTTGCAAAGACTGTTCTGGCATACATTCAATCCAGGGGCCGTGCTAGAAAGCCTGGATCTGACTACATCCTGATGGTTGAGAGGGGCAATTTGTCACATGAAGCATTCCTAAGGAATGCCAGGAACAGTGAGGAGACTTTGCGCAAAGAAGCAATAGAGAGAACAGACCTTAGTCATCTGAAGGACACTTCAAGATTAATTTCTGTTGACACCCGGCCTGGAACAGTTTACCAGGTGAAGTCAACTGGTGCAGTTGTGAGCTTAAATTCTGCTGTAGGTCTTATCCACTTCTACTGCTCTCAGCTACCTAGTGACAGATATTCAATTCTTCGTCCTGAGTTTATTATGGAGAGGCACGAAAAACCAGGAGGTCCCACGGAATATTCTTGCAAGCTTCAATTGCCGTGTAATGCACCATTTGAAAATCTTGAGGGTCCTATATGCAGTTCTATGCGTCTGGCACAACAGGCTGTTTGTCTGGCTGCTTGCAAGAAACTGCATGAGATGGGAGCATTCACTGACATGCTATTGCCTGATAAAGGAAGTGggggagaaagagaaaaggatgAACAAACTGATGAAGGAGATCCACTTCCAGGGACTGCTAGACATAGGGAGTTCTATCCTGAAGGTGTGGCTGACATACTGAAGGGAGAATGGATCTTATTTGGAAAAGATGCTTGCAACGACTCCAAATTGCTTCATCTTTACATGTATGCTGTGAAGTGCGAAAATATAGGCCATTCAAAGGATCCGTTCTTGACTCAAGTTTCAAATTTTGCAGTACTTTTTGGCAATGAGCTGGATGCAGAGGTGTTATCGATGTCAATGGATCTATTTATCGCTCGAACCGTGACTACAAAGGCATCTCTTGTCTTTAGAGGGTTGATTAATATCACTGAGAGTCAGCTGGCATCCTTGAAAAGCTTTCATGTAAGATTAATGAGCATTGTCTTGGATGTGGATGTTGAACCATCTACCACTCCTTGGGATCCTGCAAAAGCATATTTGTTTGTCCCAATGGTTGGCGATAAGTCTGTAGATCCTATGAACCATATTGACTGGCATCTGGTTGAGACAATAATTGGAGCTGATGCATGGAAGAATCCCCTCCAGAAAGCTCGACCAGATGTTTACCTTGGTACTAATGAGAGAACATTAGGTGGAGACAGAAGGGAATATGGATTTGGGAAATTGCGTCATGGCATGGCTTTTGGGCAAAAATCACATCCTACCTATGGAATCAGAGGAGCTGTGGCCCAGTTTGATGTGGTGAAAGCTTCAGGATTGGTTCCTAACAGAGATGCCATGCAAACACAAAAGCACAACAATGTGACTACCAATGGAAAATTGATGATGGCAGATACCTGTACTAATGCAGAGGATCTGGTAGGGAAAATTGTAACTGCTGCTCATTCAGGGAAGAGGTTTTATGTTGATTCAATACGCTATGAGATGTCAGCAGAGAACTCTTTCCCTAGGAAAGAAGGTTATCTTGGTCCTCTGGAGTACAGTTCTTATGCTGATTACTACAAACAAAAGTATGGGGTTGATTTGATTTACAAGCAGCAACCTCTTATAAGAGGGCGTGGTGTATCATACTGCAAGAATCTTCTGTCCCCTCGATTTGAGCACAGTGAAGCACATGAAGGTGAATCGGATGAGACACATGACAAAACTTATTATGTTTTCCTTCCTCCTGAGCTATGCTTAGTACACCCACTGCCTGGATCACTTGTCCGTGGTGCCCAAAGGTTGCCTTCAATAATGAGGAGGGTTGAAAGTATGCTACTTGCGGTTCAGCTTaagaatatgataaattatCCTGTCCAAGCTTTAAAGATCTTGGAAGCCTTGACCGCCGCCTCTTGCCAGGAGACATTCTGCTATGAAAGGGCAGAGCTTCTTGGAGATGCTTATCTGAAATGGGTTGTTAGTCGATTTCTTTTCCTAAAATACCCACAGAAACATGAGGGCCAACTTACTAGGATGAGGCAACAAATGGTCAGTAACATGGTATTATATCAGTATGCATTAAGTAAAGGGCTTCAATCATATATTCAAGCAGATCGCTTTGCCCCATCCAGATGGGCAGCTCCTGGGGTGCTGCCTGTCTTTGATGAGGATACCAAGGATGGGGAGTCATCTTTGTTTGACCAGGAGCGATCCATTTCTAAGGCCGAGAGGATGGATTGTCACAATGATGGATATGAAGATGAGATGGAAGATGGTGAGCTTGAGAGTGATTCAAGTTCTTACAGAGTTCTGTCCAGTAAGACACTTGCAGATGTTGTGGAAGCACTGATTGGGGTATATTACGTAGAAGGTGGTAAGAATGCTGCTAACCACCTTATGAAATGGATTGGCATTCAAATAGAGTTTGATCCTGATGAGATGGAGTGTACAAGAAAGCCATTTAATGTTCCAGACAGCATACTTAGGAGTGTTGATTTTGATACTTTAGAAGGTGCTTTAAATATGAAGTTTAAAGACAGCGGGCTGCTGGTAGAATCCATAACTCATGCCTCCAGACCATCTTCAGGAGTATCCTGTTATCAGCGGTTGGAGTTTGTTGGTGATGCTGTCTTGGATCATCTTATTACCAGGCACTTGTTTTTCACGTACACAAATCTGCCACCAGGACGTTTGACTGACCTTCGGGCTGCTGCTGTAAACAACGAAAATTTTGCACGTGTTGCAGTTAAGCACAACCTTCATGTGCATCTCCGACATGGGTCCAGTGCCCTAGAAAAACAGATTAAAGAATTTGTGAAGGAAGTTCAAGATGAATTGTTAAAGCCAGGTTTTAACTCCTTTGGTCTGGGAGACTGCAAAGCTCCCAAGGTCCTTGGTGACATTGTTGAATCTATTGCAGGCGCCATTTTTCTCGACAGTGGGAGGGATACTACTGTTGTTTGGAAGGTTTTTCAGCCTCTTTTGCATCCTATGGTTACCCCAGAGACTCTGCCAATGCATCCTGTGCGTGAGCTGCAAGAGCGATGCCAGCAGCAAGCTGAAGGCTTAGAGTACAAAGCAAGTCGTATTGGCAATTTGGCCACTGTTGAAGTATTCATTGATGGGGTGCAAGTAGGGGCTGCTCAAAATCCACAGAAAAAAATGGCACAGAAATTAGCTGCCAGAAATGCCCTTGCTGCTTTGAAAGAGAAGGAAGTGGGTAAAACTCAGGAGAAGAATGATGAAAACGGGAAAAAGAATGGAAACCAGACATTCACTAGACAAACATTAAATGATATCTGTTTAAGAAGAAATTGGCCTATGCCGTTCTACAGGTGTGTGAATGAGGGTGGTCCAGCACATGCGAAAAGGTTTACATTTGCGGTGCGCGTCAATACTACTGATAGAGGATGGACGGATGAATGTGTTGGAGAGCCAATGCCAAGCGTCAAGAAGGCCAAAGACTCAGCTGCTGTTCTTCTCTTAGAACTACTAAACAAATTATACTCGTGA 5067 0.4279 MASDTKQENNGKLDKKSEEAKERVPEEKARQYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIKSIQESLQKQNKKMLAVFLVPKVPLVYQQAEVIRERTGYHVGHYCGEMGQDFWDARRWQREFDSKHVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTTKERRPSVFGMTASPVNLKGVSSQVDCAIKIRNLESKLDSIVCTIKDRKELEKHVPMPSEVVVEYDKAASLCYLHEQIKQMEVEVEEAAKSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAVNYALGELGQWCAYKVAQSFLAALQNDERANYQLDVKFQESYLSKVVSLLKCQLSEGAVSDKNAGIDDSENGAAQSGSDHEEMEEGELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQALIKILLKYQHTEDFRAIIFVERVVSALVLPKVFAELPSLSFVKCASLIGHNNSQEMRTYQMQDTIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMVERGNLSHEAFLRNARNSEETLRKEAIERTDLSHLKDTSRLISVDTRPGTVYQVKSTGAVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMERHEKPGGPTEYSCKLQLPCNAPFENLEGPICSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGGEREKDEQTDEGDPLPGTARHREFYPEGVADILKGEWILFGKDACNDSKLLHLYMYAVKCENIGHSKDPFLTQVSNFAVLFGNELDAEVLSMSMDLFIARTVTTKASLVFRGLINITESQLASLKSFHVRLMSIVLDVDVEPSTTPWDPAKAYLFVPMVGDKSVDPMNHIDWHLVETIIGADAWKNPLQKARPDVYLGTNERTLGGDRREYGFGKLRHGMAFGQKSHPTYGIRGAVAQFDVVKASGLVPNRDAMQTQKHNNVTTNGKLMMADTCTNAEDLVGKIVTAAHSGKRFYVDSIRYEMSAENSFPRKEGYLGPLEYSSYADYYKQKYGVDLIYKQQPLIRGRGVSYCKNLLSPRFEHSEAHEGESDETHDKTYYVFLPPELCLVHPLPGSLVRGAQRLPSIMRRVESMLLAVQLKNMINYPVQALKILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQYALSKGLQSYIQADRFAPSRWAAPGVLPVFDEDTKDGESSLFDQERSISKAERMDCHNDGYEDEMEDGELESDSSSYRVLSSKTLADVVEALIGVYYVEGGKNAANHLMKWIGIQIEFDPDEMECTRKPFNVPDSILRSVDFDTLEGALNMKFKDSGLLVESITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTNLPPGRLTDLRAAAVNNENFARVAVKHNLHVHLRHGSSALEKQIKEFVKEVQDELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTTVVWKVFQPLLHPMVTPETLPMHPVRELQERCQQQAEGLEYKASRIGNLATVEVFIDGVQVGAAQNPQKKMAQKLAARNALAALKEKEVGKTQEKNDENGKKNGNQTFTRQTLNDICLRRNWPMPFYRCVNEGGPAHAKRFTFAVRVNTTDRGWTDECVGEPMPSVKKAKDSAAVLLLELLNKLYS 1688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0051 1688 MobiDBLite consensus disorder prediction 1589 1603 - -
Ssu4g0051 1688 SUPERFAMILY PAZ domain 981 1107 IPR036085 GO:0005515
Ssu4g0051 1688 CDD DSRM_DCL_plant 1616 1677 - -
Ssu4g0051 1688 Pfam Ribonuclease III domain 1386 1499 IPR000999 GO:0004525|GO:0006396
Ssu4g0051 1688 Pfam Ribonuclease III domain 1164 1310 IPR000999 GO:0004525|GO:0006396
Ssu4g0051 1688 Gene3D - 23 267 IPR027417 -
Ssu4g0051 1688 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1610 1685 IPR014720 -
Ssu4g0051 1688 Gene3D - 422 588 IPR027417 -
Ssu4g0051 1688 Pfam Helicase conserved C-terminal domain 432 549 IPR001650 -
Ssu4g0051 1688 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 624 719 IPR005034 GO:0016891
Ssu4g0051 1688 MobiDBLite consensus disorder prediction 713 737 - -
Ssu4g0051 1688 MobiDBLite consensus disorder prediction 1 28 - -
Ssu4g0051 1688 Gene3D Ribonuclease III domain 1347 1520 IPR036389 GO:0004525|GO:0006396
Ssu4g0051 1688 Gene3D Ribonuclease III domain 1128 1324 IPR036389 GO:0004525|GO:0006396
Ssu4g0051 1688 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 36 213 IPR014001 -
Ssu4g0051 1688 SMART DRBM_3 1611 1684 IPR014720 -
Ssu4g0051 1688 SMART DRBM_3 1526 1587 IPR014720 -
Ssu4g0051 1688 SMART PAZ_2_a_3 967 1131 IPR003100 GO:0005515
Ssu4g0051 1688 SMART riboneu5 1146 1330 IPR000999 GO:0004525|GO:0006396
Ssu4g0051 1688 SMART riboneu5 1366 1522 IPR000999 GO:0004525|GO:0006396
Ssu4g0051 1688 SUPERFAMILY dsRNA-binding domain-like 1614 1684 - -
Ssu4g0051 1688 CDD DEXHc_dicer 28 227 - -
Ssu4g0051 1688 Gene3D Dicer dimerisation domain 619 720 IPR038248 -
Ssu4g0051 1688 Pfam Dicer dimerisation domain 624 712 - -
Ssu4g0051 1688 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 436 596 IPR001650 -
Ssu4g0051 1688 SUPERFAMILY RNase III domain-like 1350 1521 IPR036389 GO:0004525|GO:0006396
Ssu4g0051 1688 Pfam PAZ domain 976 1127 IPR003100 GO:0005515
Ssu4g0051 1688 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1610 1683 - -
Ssu4g0051 1688 Gene3D - 1523 1602 - -
Ssu4g0051 1688 CDD SF2_C_dicer 429 559 - -
Ssu4g0051 1688 Gene3D paz domain 983 1105 - -
Ssu4g0051 1688 SMART helicmild6 465 551 IPR001650 -
Ssu4g0051 1688 ProSiteProfiles Ribonuclease III family domain profile. 1150 1310 IPR000999 GO:0004525|GO:0006396
Ssu4g0051 1688 Gene3D - 1616 1686 - -
Ssu4g0051 1688 MobiDBLite consensus disorder prediction 379 403 - -
Ssu4g0051 1688 PANTHER DICER-RELATED 7 1686 - -
Ssu4g0051 1688 CDD RIBOc 1367 1522 IPR000999 GO:0004525|GO:0006396
Ssu4g0051 1688 MobiDBLite consensus disorder prediction 710 737 - -
Ssu4g0051 1688 ProSiteProfiles PAZ domain profile. 967 1107 IPR003100 GO:0005515
Ssu4g0051 1688 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1525 1588 IPR014720 -
Ssu4g0051 1688 SUPERFAMILY dsRNA-binding domain-like 1481 1608 - -
Ssu4g0051 1688 MobiDBLite consensus disorder prediction 1589 1609 - -
Ssu4g0051 1688 Pfam Type III restriction enzyme, res subunit 35 195 IPR006935 GO:0003677|GO:0005524|GO:0016787
Ssu4g0051 1688 PANTHER ENDORIBONUCLEASE DICER HOMOLOG 1 7 1686 - -
Ssu4g0051 1688 CDD PAZ_CAF_like 960 1109 - -
Ssu4g0051 1688 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 76 563 IPR027417 -
Ssu4g0051 1688 SMART ultradead3 25 228 IPR014001 -
Ssu4g0051 1688 CDD RIBOc 1148 1328 IPR000999 GO:0004525|GO:0006396
Ssu4g0051 1688 SUPERFAMILY RNase III domain-like 1123 1328 IPR036389 GO:0004525|GO:0006396
Ssu4g0051 1688 ProSitePatterns Ribonuclease III family signature. 1386 1394 IPR000999 GO:0004525|GO:0006396
Ssu4g0051 1688 ProSiteProfiles Ribonuclease III family domain profile. 1351 1499 IPR000999 GO:0004525|GO:0006396
Ssu4g0051 1688 MobiDBLite consensus disorder prediction 8 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0051 Ssu-Chr4 946940 959158 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0051 448 591 Eukaryotic Initiation Factors Gene Family AT5G11200 29.252 1.29e-06 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0051 K11592 - gmx:100811631 3239.13