Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0046 ATGGAGGATGGGAGTAGGGTTCCAGCGGGGGATGGCCCGTCTTACTGGCTGGATGCGTGTGAGGACATATCGTGTGATTTCATTGATTTTGATGTCTCTTCCATCGTGTCAGACCAGCCTGACAACGCCTCCAATCAGGACTTCTTCGGTGACATTGATAAGATATTGGACAGCATCAAGAACGGTGCTGGCCTCCCTCTTCATGCTGAACCAAATTCCAACTCTAATGCCACTgcaggaggaggaggaggaggaggagaagtGTGGTTGCCTAATGATGCCTCCAATGCCACTTTGGAGGATGGGGAGAATCGTACTCCTGCTCCTGCTCCTGCTGCTGATGCTTCTGACCATTCTGGCTGTGCTCAGAGTAACGGCTCTTGTAAGCTGTCTAATGGGAATGAAGGGGGAGTTTTGGTTAATCATTCTCAGGAAAGAGGAGCTCTCACTCTGAATGGAGGGCATGATGTTGATGGTGAAGAGAGGTGCAGCAAAAGGGCTCGGCTCGGCAGCTACAAGAATGAGAGGCCTTATTATGGTAGAGTAAATTATCAAGGGAAGGAGAGGGAGAGGTGTTTTAATAACAGGAAGAGGCCGCGTGATAGGGATGAGATTGATAGGAGGGATAAGGATGGTATAAGGAAAAGGGAACATTATGGTGCTTGTGGCAGGAGGGATCTTAGAGATAGGGATTGGAGGGATAGAGAACCCAGGGGTTACTGGGAGAGGGATAAGTCCGGTTCCAATGATTTGGTCTTTCGCCTGGGGGCTTGGGAGCCTGATCGTAATCGAGAAGACAAAATGGCAAGCGACACTAAACAGGAAAACAATGGAAAGCTTGATAAGAAGTCTGAGGAGGCTAAGGAGAGGGTTCCTGAGGAAAAAGCTAGACAATATCAGTTGGATGTTCTTGAGCaggcaaagaagaaaaatactatagctTTTCTTGAAACTGGAGCAGGGAAAACCTTAATTGCTGTTCTTCTCATTAAAAGTATACAGGAGAGTTTGCAgaagcaaaataagaaaatgctTGCAGTATTTTTAGTTCCAAAAGTTCCACTTGTTTACCAGCAAGCTGAAGTAATTCGTGAGCGGACTGGTTATCACGTGGGCCACTATTGCGGAGAAATGGGGCAAGATTTCTGGGATGCTCGAAGGTGGCAGCGTGAATTTGACAGCAAACATGTTTTAGTCATGACCGCTCAAATTCTTTTGAACATTTTGAGGCATAGCATAATAAAAATGGAAGCAATCAATCTCTTGATTCTGGATGAGTGCCACCATGCCGTGAAGAAACACCCATATTCACTGGTGATGTCTGAGTTCTACCATACAACAACCAAAGAGAGGAGGCCATCTGTATTTGGAATGACTGCTTCTCCTGTTAACTTGAAGGGTGTCTCCAGCCAAGTAGATTGTGCAATAAAAATTCGTAATCTTGAAAGTAAGCTAGATTCTATAGTTTGCACCATAAAAGATCGTAAGGAGCTGGAGAAACATGTGCCAATGCCCTCTGAAGTTGTGGTGGAGTATGATAAAGCTGCCAGTTTATGTTATCTACATGAGCAGATAAAGCAGATGGAGGTTGAAGTTGAAGAAGCTGCAAAATCTAGTTCAAGAAGAAGCAAATGGCAATTTATGGGAGCTAGAGATGCTGGAGCTAAGGAAGAGCTGCGCCAAGTATATGGTGTTTCTGAAAGAACAGAAAGCGATGGAGCTGCAAACCTAATTCAGAAGTTGAGAGCTGTTAATTATGCACTTGGTGAACTGGGACAATGGTGTGCATATAAGgTTGCACAATCCTTTTTAGCAGCTTTGCAAAATGATGAAAGGGCCAACTACCAACTTGATGTCAAGTTTCAGGAATCTTATCTGAGTAAAGTTGTCTCTCTTCTGAAATGCCAACTGTCAGAGGGTGCAGTTTCTGACAAAAATGCTGGTATTGATGACTCAGAGAATGGTGCAGCTCAAAGTGGGTCTGATCATGAAGAGATGGAAGAAGGAGAGCTTCTAGACAGTCATGTTGTCTCTGGCGGGGAGCATGTGGACGTCATTATAGGAGCTGCTGTGGCTGATGGCAAGGTGACCCCCAAGGTCCAGGCACTAATCAAAATACTTCTCAAATATCAGCATACAGAAGACTTCCGTGCAATCATCTTTGTTGAGCGTGTTGTGTCTGCATTAGTTCTGCCCAAGGTCTTTGCAGAGCTTCCATCTCTTAGTTTTGTGAAGTGTGCAAGCTTGATTGGTCACAATAACAGTCAGGAAATGCGGACCTATCAAATGCAGGATACAATTGCCAAGTTCCGTGATGGGCGGGTCACATTGTTAGTTGCCACTAGTGTTGCTGAAGAAGGACTTGATATCCGGCAATGCAATGTTGTTATTCGCTTTGACCTTGCAAAGACTGTTCTGGCATACATTCAATCCAGGGGCCGTGCTAGAAAGCCTGGATCTGACTACATCCTGATGGTTGAGAGGGGCAATTTGTCACATGAAGCATTCCTAAGGAATGCCAGGAACAGTGAGGAGACTTTGCGCAAAGAAGCAATAGAGAGAACAGACCTTAGTCATCTGAAGGACACTTCAAGATTAATTTCTGTTGACACCCGGCCTGGAACAGTTTACCAGGTGAAGTCAACTGGTGCAGTTGTGAGCTTAAATTCTGCTGTAGGTCTTATCCACTTCTACTGCTCTCAGCTACCTAGTGACAGATATTCAATTCTTCGTCCTGAGTTTATTATGGAGAGGCACGAAAAACCAGGAGGTCCCACGGAATATTCTTGCAAGCTTCAATTGCCGTGTAATGCACCATTTGAAATCTTGAGGGTCCTATATGCAGTTCTATGCGTCTGGCACAACAGGCTGTTTGTCTGGCTGCTTGCAAGAAACTGCATGAGATGGGAGCATTCACTGACATGCTATTGCCTGATAAAGGAAGTggggagaaagagaaaaggatgA 2967 0.4365 MEDGSRVPAGDGPSYWLDACEDISCDFIDFDVSSIVSDQPDNASNQDFFGDIDKILDSIKNGAGLPLHAEPNSNSNATAGGGGGGGEVWLPNDASNATLEDGENRTPAPAPAADASDHSGCAQSNGSCKLSNGNEGGVLVNHSQERGALTLNGGHDVDGEERCSKRARLGSYKNERPYYGRVNYQGKERERCFNNRKRPRDRDEIDRRDKDGIRKREHYGACGRRDLRDRDWRDREPRGYWERDKSGSNDLVFRLGAWEPDRNREDKMASDTKQENNGKLDKKSEEAKERVPEEKARQYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIKSIQESLQKQNKKMLAVFLVPKVPLVYQQAEVIRERTGYHVGHYCGEMGQDFWDARRWQREFDSKHVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTTKERRPSVFGMTASPVNLKGVSSQVDCAIKIRNLESKLDSIVCTIKDRKELEKHVPMPSEVVVEYDKAASLCYLHEQIKQMEVEVEEAAKSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAVNYALGELGQWCAYKVAQSFLAALQNDERANYQLDVKFQESYLSKVVSLLKCQLSEGAVSDKNAGIDDSENGAAQSGSDHEEMEEGELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQALIKILLKYQHTEDFRAIIFVERVVSALVLPKVFAELPSLSFVKCASLIGHNNSQEMRTYQMQDTIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMVERGNLSHEAFLRNARNSEETLRKEAIERTDLSHLKDTSRLISVDTRPGTVYQVKSTGAVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMERHEKPGGPTEYSCKLQLPCNAPFEILRVLYAVLCVWHNRLFVWLLARNCMRWEHSLTCYCLIKEVGRKRKG 988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0046 988 Gene3D - 290 534 IPR027417 -
Ssu4g0046 988 MobiDBLite consensus disorder prediction 190 209 - -
Ssu4g0046 988 PANTHER ENDORIBONUCLEASE DICER HOMOLOG 1 252 943 - -
Ssu4g0046 988 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 703 863 IPR001650 -
Ssu4g0046 988 Pfam Helicase conserved C-terminal domain 699 816 IPR001650 -
Ssu4g0046 988 Pfam Dicer dimerisation domain 891 943 - -
Ssu4g0046 988 MobiDBLite consensus disorder prediction 67 127 - -
Ssu4g0046 988 CDD DEXHc_dicer 295 494 - -
Ssu4g0046 988 Gene3D - 689 855 IPR027417 -
Ssu4g0046 988 SMART ultradead3 292 495 IPR014001 -
Ssu4g0046 988 MobiDBLite consensus disorder prediction 646 670 - -
Ssu4g0046 988 MobiDBLite consensus disorder prediction 262 294 - -
Ssu4g0046 988 SMART helicmild6 732 818 IPR001650 -
Ssu4g0046 988 Gene3D Dicer dimerisation domain 886 951 IPR038248 -
Ssu4g0046 988 CDD SF2_C_dicer 696 826 - -
Ssu4g0046 988 Pfam Type III restriction enzyme, res subunit 302 462 IPR006935 GO:0003677|GO:0005524|GO:0016787
Ssu4g0046 988 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 303 480 IPR014001 -
Ssu4g0046 988 PANTHER DICER-RELATED 252 943 - -
Ssu4g0046 988 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 343 830 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0046 Ssu-Chr4 927589 936242 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0046 715 858 Eukaryotic Initiation Factors Gene Family AT5G11200 29.252 1.14e-06 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0046 K11592 - gmx:100780953 1620.91