Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0045 ATGGAGTTGATGCAACATGTTAAAGGTAATTATTCCGATAGCagggaagaagaggaggaagaggaagcaACAGAAATTATCACAATCACAAGAGAAGCAGAAAGCCGCAGGTTACAGCAGCAGCAAGATGGCGCATCCAACTTCGGAAAGCAGCTAGACTTGATGGACTTGTCACTGGGGAGCAacaaggaagaggaagaaggcgGCAATTTGCTGCAACAGCGACAAGTAGCAGGTGGAGGTCATGGCACTTGTTCAACCACGAAGGAAGTAGTGGAGAAAGAACACATGTTTGACAAAGTGGTGACACCGAGCGATGTAGGGAAGCTGAACAGGCTGGTGATACCGAAGCAGCACGCGGAGAAGTACTTCCCCCTTGACTACTCATCCAACGAGAAGGGGCTGCTCCTCAATTTCGAGGACAGGAATGGAAAGGCGTGGCGGTTCAGGTATTCGTATTGGAACAGCAGCCAGAGCTATGTGATGACAAAGGGGTGGAGCCGTTTCGTGAAGGAGAAGAAGCTCGATGCTGGTGACATTGTCTCCTTCCAGCGTGGCCTTGGCGATTTGTATACACATAGGTTGTACATAGATTGGAGGCGAAGGTCTGATCATCCTCATCCTCATCCTCATCCTCATCCTCATGCCCCTGACCACCCTTCaacctctcttttctttccgcCCTCTATCAGATGGTACTCTCTCCCTGCCACCTCCTCTATGATGCCACCTCGCTACCATCTCAATTACAACAACATCTTCACTTTTCACCAGCAACAGTACCTTGGTGCTACTGGCACTCTTCACGGCAATTATGGGGAGCAGAATTCCGGATCTGGCTCACTCTATTACCTCAGGTCCTCCACGTCAATGGGGGGTGGTGATCAAAACTTGCAAGGGAGAGGGAACAACATTGTCCCCATGATCATTGATTCTGTGCCGGTTAACGTTGCTCATCATCGCCATGGACATGGACATGGAGACATTATTAGTGGTGCTGCTTCTGCTACTACTAGTAGTGGAAAACGGCTAAGGCTGTTTGGTGTGAACATGGAATGTGCTTCCTCAGCAGAAGATTCCAAAGGCTCGGCAGCACATGTGACAGTGGGTAATTCAgttccctcttcttcttcttcttctcttcagcGCTTGAGGGTGCCCCATGAAGACCCGCTTTCGTCGTCAGCAAGGTTTGGGGATCACAAAGGGGGGACTTCGGTGCTGTTTGATTTGGATCCCTCTTTGCAGTATCGGCAgtga 1260 0.4595 MELMQHVKGNYSDSREEEEEEEATEIITITREAESRRLQQQQDGASNFGKQLDLMDLSLGSNKEEEEGGNLLQQRQVAGGGHGTCSTTKEVVEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDYSSNEKGLLLNFEDRNGKAWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGLGDLYTHRLYIDWRRRSDHPHPHPHPHPHAPDHPSTSLFFPPSIRWYSLPATSSMMPPRYHLNYNNIFTFHQQQYLGATGTLHGNYGEQNSGSGSLYYLRSSTSMGGGDQNLQGRGNNIVPMIIDSVPVNVAHHRHGHGHGDIISGAASATTSSGKRLRLFGVNMECASSAEDSKGSAAHVTVGNSVPSSSSSSLQRLRVPHEDPLSSSARFGDHKGGTSVLFDLDPSLQYRQ 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0045 419 MobiDBLite consensus disorder prediction 1 24 - -
Ssu4g0045 419 SUPERFAMILY DNA-binding pseudobarrel domain 95 201 IPR015300 -
Ssu4g0045 419 ProSiteProfiles B3 DNA-binding domain profile. 98 203 IPR003340 GO:0003677
Ssu4g0045 419 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 49 377 IPR044800 GO:0003700
Ssu4g0045 419 MobiDBLite consensus disorder prediction 31 50 - -
Ssu4g0045 419 MobiDBLite consensus disorder prediction 358 419 - -
Ssu4g0045 419 CDD B3_DNA 96 185 IPR003340 GO:0003677
Ssu4g0045 419 Gene3D - 91 213 IPR015300 -
Ssu4g0045 419 Pfam B3 DNA binding domain 98 202 IPR003340 GO:0003677
Ssu4g0045 419 MobiDBLite consensus disorder prediction 361 384 - -
Ssu4g0045 419 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 49 377 - -
Ssu4g0045 419 SMART B3_2 98 203 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0045 Ssu-Chr4 831740 833207 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0045 54 356 RAV Transcription Factor Family AT2G46870 50.654 3.17e-82 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ssu4g0045 B3 9.3e-29 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0045 - - vun:114162133 565.074
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0045 4 831740 833207 Ssu4g0045 4 831740 833207 ECH