Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0044 ATGGCTTCCGCTTGTGCTTCCTGTGCCATTGCAGCTGTTGCCATCTCTACGCCAAGTTCCCAGAAGAATGGATCAGCCTTGGGAGCCCCAAAAGCTTCTTTTCTTGGTGGGAGGAAATTGAGGGTGAACAAGTACACAGCACCAGTTGGAGGACGATCCAGCCCTACAGTGTGTGCAGTAGCTGACCCTGACAGGCCTCTCTGGTTCCCAGGCAGCACCCCTCCTCCATGGCTTGATGGCAGTCTCCCTGGAGACTTTGGCTTTGACCCTCTTGGTCTTGGATCTGATCCCGAGAGTCTGAGGTGGAATGTTCAGGCAGAGTTAGTGCACTGCAGATGGGCAATGTTGGGTGCTGCTGGCATTTTCATTCCAGAATTCCTAACGAAGATTGGTGTCTTAAACACCCCCTCATGGTACACAGCTGGAGAACTGGAATACTTCACAGATACCACTACCCTCTTCATAGTGGAGCTCATTTTCATTGGCTGGGCTGAGGGTAGAAGGTGGGCTGACATAATCAAGCCAGGGTGTGTCAACACTGACCCCATCTTTCCCAACAACAAGCTCACGGGAACTGATGTTGGTTACCCAGGTGGGCTTTGGTTTGACCCCCTTGGATGGGGGAGTGGTTCTCCCGACAAGATCAAGGAGTTGAGAACTAAGGAGATCAAGAATGGGAGATTGGCCATGTTGGCTGTCATGGGTGCATGGTTCCAGCACATATACACTGGCACCGGTCCTATTGACAACCTCTTTGCCCACCTTGCAGATCCTGGCCATGCTACCATTTTTGCTGCTTTCACCCCTAAGTGA 813 0.5191 MASACASCAIAAVAISTPSSQKNGSALGAPKASFLGGRKLRVNKYTAPVGGRSSPTVCAVADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGVLNTPSWYTAGELEYFTDTTTLFIVELIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPDKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFTPK 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0044 270 Pfam Chlorophyll A-B binding protein 74 240 IPR022796 -
Ssu4g0044 270 Gene3D Chlorophyll a/b binding protein domain 75 260 - -
Ssu4g0044 270 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 270 IPR001344 GO:0009765|GO:0016020
Ssu4g0044 270 SUPERFAMILY Chlorophyll a-b binding protein 61 268 - -
Ssu4g0044 270 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 1 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0044 Ssu-Chr4 807828 809063 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0044 46 270 Chloroplast and Mitochondria Gene Families AT3G61470 88.938 9.26e-149 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0044 K08908 - gmx:100784089 533.872