Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0041 ATGATTCAGCCAGGACTAGGAGCATGTTCCAAGTTGGAGAGATTTCGAGCAGGTTCCAATTCACTATCTGGACCCCTTCCCGGTGATATTTTGAATGCTGTTACTCTCACTGAAATCTCCTTACCCCTCAATAAACTCAATGGAACCATTGGTGAGGGCATTGTTAACCTTGCCAACCTCACAGTTTTGGAGCTCTACTCCAATAATTTCACGGGGCCAATTCCCTCGGATATTGGTAAGCTCTCCAAACTGGAACGTTTACTCCTTCATGCCAACAATCTAACTGGTACTCTGCCCCCATCGCTTATGGACTGTGTCAATCTTGTCATGTTGAATGTAAGGCTCAACTCCTTGGAGGGAAACCTCTCAGCATTGAATTTCTCCAGACTCCTTAGACTCACAGCACTTGACCTTGGCAACAATAGCTTTGCCGGTATTTTACCACCAACCCTGTATGCCTGTAAGTCACTTAAAGCGGTAAGGCTAGCATCTAATCAGCTTGAGGGACAGATCTCACCTGACATACTTGGACTTCAGTCTCTGGCTTTCCTATCAATTTCTACCAACAAGCTGAGTAATGTCACTGGGGCTCTGAAGTTACTCATGGAACTCAAGAACCTTAGTACTCTTATGCTCTCCCAGAATTTTTTCAATGAAATGATGCCAGATGATGTGAACATAACAAATCCAGATGGATCCCAAAAGATCCAAGTTCTAGGCTTGGGAGGTTGTAAATTCACCGGCCAAATACCACGCTGGCTTGTTAATCTGAAGCAGCTCGAGGTCTTGGATTTGTCCTATAATCAAATTAGTGGCTCAATTCCTCCTTGGCTGTACACACTTCCTCAGTTTTTCTACATAGACTTGTCTTTTAATCGCCTCACAGGAATATTTCCAAGTGAGCTCACAAGGCTTCCAGCACTAACATCACAACAGGCATACGATAAAGTAGAAAGGACTTACCTAGAGTTACCCGTCTTTGCTAATGCCAACAATGTTTTTCAGATGCAATATAATCAGATTTCCAACCTACCACCAGCAATATATCTGGGAAACAATAGCCTCAGTGGCAGTATCCCTACAGAGATTGGCCAACTGAAAGTCCTTCATCAGCTGGACCTTAGTTACAACAAATTCTCTGGCAATATCCCAGCGGAAATTTCTAACTTGATTAACTTAGAGAAACTGTACCTCTCGGGAAACCAACTTTCTGGTGAAATTCCTGTTTCACTCAAAAGCTTGCATTTTTTGTCTGTTTTCACTGTAGCAAACAATGATCTTCAAGGACCGATACCAACTGGTGGTCAATTCGATACTTTCCCCTCTTCCAGCTTTGAAGGAAACCCACGGTTGTGTGGTTCAGTTGTTCAGCGCTCGTGTCTTCCTCAACAGGGTACTACCGCCCGTGGTCAcagttcaaacaaaaaattgataattggaTTTGTCATTGCAGCCTGTTTTGGCACTGTTTCTTTCATTTCAGTGTTGATAGTGTGGATAATATCCAAGAGAAGGATCAATCCAGGTGGAGACCCTGACAAGATTGAGCTAGAATCAATGTCTGCTGCCAACTCTTACAGTGGAGTTCATCCTGAGGTTGACAAAGAGGCTAGCCTAGTGGTATTGTTCCctaataaaacaaatgaaatcaaGGACCTTAccatatttgaaatattaaaagcCACTGAAAATTTCAGTCAGGCAAACATAATAGGATGTGGGGGTTTTGGTTTGGTTTATAAAGCAACGTTACCAAATGGAACTACTCTGGCCATCAAGAAACTTTCAGGGGATTTTGGTCTTATGGAAAGGGAATTCAAAGCAGAGGTAGAGGCTTTGTCAACAGCACAGCATGAAAATCTGGTTGCATTGCAAGGCTATTGTGTGCATGAGGGTTTTCGGCTTCTCATATATACTTACATGGAAAATGGAAGTCTGGATTACTGGTTGCATGAAAAGGCCGAAGGACCATCTCAACTTGATTGGCCTACTCGACTGAAGATTGCACAAGGTGCAAGTTGTGGATTGGCCTACATGCATCAGATATGCGAACCACACATAGTGCATCGTGATATAAAATCAAGCAATATACTTCTTAATGAAAAGTTTGAGGCACATGTTGCTGATTTTGGGTTGGCCCGATTGATTCTTCCTTATCATACTCACGTTACAACTGAACTTGTAGGTACATTAGGTTACATACCCCCAGAGTACGGACAAGCATGGGTGGCAACTCTGAGAGGGGATGTCTACAGCTTTGGGGTTGTCATGCTTGAGCTGCTCACTGGGAGGAGACCTGTAGATATAAGCAAGCCTAAAGTGTCAAGGGAGTTGGTTGCCTGGGTTCAACAAATGAGGAGTGAAGGAAAACAAGATAAAGTCTTTGATCCTCTTCTGAGAGGAAAGGGCTTTGAAGAAGAGATGCAGCAGGTTCTTGATGTAGCCTGCATGTGTGTCAACCAGAATCCTTTCAAGAGACCAAGTATCAGAGAAGTTGTTGAATGGCTGAAGAATGTAGGATCATCAAACCAGCAAATGAATAAAGATTAG 2550 0.4227 MIQPGLGACSKLERFRAGSNSLSGPLPGDILNAVTLTEISLPLNKLNGTIGEGIVNLANLTVLELYSNNFTGPIPSDIGKLSKLERLLLHANNLTGTLPPSLMDCVNLVMLNVRLNSLEGNLSALNFSRLLRLTALDLGNNSFAGILPPTLYACKSLKAVRLASNQLEGQISPDILGLQSLAFLSISTNKLSNVTGALKLLMELKNLSTLMLSQNFFNEMMPDDVNITNPDGSQKIQVLGLGGCKFTGQIPRWLVNLKQLEVLDLSYNQISGSIPPWLYTLPQFFYIDLSFNRLTGIFPSELTRLPALTSQQAYDKVERTYLELPVFANANNVFQMQYNQISNLPPAIYLGNNSLSGSIPTEIGQLKVLHQLDLSYNKFSGNIPAEISNLINLEKLYLSGNQLSGEIPVSLKSLHFLSVFTVANNDLQGPIPTGGQFDTFPSSSFEGNPRLCGSVVQRSCLPQQGTTARGHSSNKKLIIGFVIAACFGTVSFISVLIVWIISKRRINPGGDPDKIELESMSAANSYSGVHPEVDKEASLVVLFPNKTNEIKDLTIFEILKATENFSQANIIGCGGFGLVYKATLPNGTTLAIKKLSGDFGLMEREFKAEVEALSTAQHENLVALQGYCVHEGFRLLIYTYMENGSLDYWLHEKAEGPSQLDWPTRLKIAQGASCGLAYMHQICEPHIVHRDIKSSNILLNEKFEAHVADFGLARLILPYHTHVTTELVGTLGYIPPEYGQAWVATLRGDVYSFGVVMLELLTGRRPVDISKPKVSRELVAWVQQMRSEGKQDKVFDPLLRGKGFEEEMQQVLDVACMCVNQNPFKRPSIREVVEWLKNVGSSNQQMNKD 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0041 849 SUPERFAMILY Protein kinase-like (PK-like) 549 836 IPR011009 -
Ssu4g0041 849 SUPERFAMILY L domain-like 335 452 - -
Ssu4g0041 849 ProSiteProfiles Protein kinase domain profile. 565 836 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g0041 849 Pfam Protein kinase domain 566 834 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g0041 849 Gene3D Ribonuclease Inhibitor 126 467 IPR032675 -
Ssu4g0041 849 ProSitePatterns Protein kinases ATP-binding region signature. 571 594 IPR017441 GO:0005524
Ssu4g0041 849 Gene3D Phosphorylase Kinase; domain 1 529 640 - -
Ssu4g0041 849 ProSiteProfiles Leucine-rich repeat profile. 259 282 IPR001611 GO:0005515
Ssu4g0041 849 Pfam Leucine rich repeat 236 294 IPR001611 GO:0005515
Ssu4g0041 849 Pfam Leucine Rich Repeat 392 414 IPR001611 GO:0005515
Ssu4g0041 849 SUPERFAMILY L domain-like 4 310 - -
Ssu4g0041 849 PANTHER OS02G0155400 PROTEIN 2 837 - -
Ssu4g0041 849 SMART serkin_6 565 836 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g0041 849 Gene3D Ribonuclease Inhibitor 6 125 IPR032675 -
Ssu4g0041 849 ProSitePatterns Serine/Threonine protein kinases active-site signature. 687 699 IPR008271 GO:0004672|GO:0006468
Ssu4g0041 849 SMART LRR_typ_2 390 414 IPR003591 -
Ssu4g0041 849 SMART LRR_typ_2 130 154 IPR003591 -
Ssu4g0041 849 SMART LRR_typ_2 81 105 IPR003591 -
Ssu4g0041 849 SMART LRR_typ_2 257 281 IPR003591 -
Ssu4g0041 849 SMART LRR_typ_2 178 200 IPR003591 -
Ssu4g0041 849 SMART LRR_typ_2 204 227 IPR003591 -
Ssu4g0041 849 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 2 837 - -
Ssu4g0041 849 Gene3D Transferase(Phosphotransferase) domain 1 641 849 - -
Ssu4g0041 849 ProSiteProfiles Leucine-rich repeat profile. 392 414 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0041 Ssu-Chr4 746545 749094 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0041 2 504 Miscellaneous Gene Families AT1G17250 52.652 3.60e-165 496
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Ssu4g0041 Pkinase 1.6e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0041 - - gmx:100782574 1569.67